Search Results for "log analysis tools" - Page 2
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Showing 55 open source projects for "log analysis tools"
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MS-Helios
MS-Helios: A Circos wrapper to visualize multi-omic datasets
Advances in high-resolution mass spectrometry facilitate the identification of hundreds of metabolites, thousands of proteins and their post-translational modifications. This remarkable progress poses a challenge to data analysis and visualization, requiring methods to reduce dimensionality and represent the data in a compact way. To provide a more holistic view, we recently introduced circular proteome maps (CPMs). However, the CPM construction requires prior data transformation and... -
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PINCIS
PINCIS.pl is a Perl bioinf. script to analyze PICS data
PINCIS.pl (PIcs N-/C-terminal Inferred Substrates perl script) is a small, command line tool to designate and analyze PICS (Schilling et al., Nat. Protocols, 2011) data to gain the prime and non-prime site specificity of proteases. Thus, the script filters given peptide lists for library peptides (generated by the digestion protease in the proteomics workflow rather then the protease of interest) and prints out lists of inferred N- and C-terminal cleavage window extensions which can be... -
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Neural Networks Collection
Neural Networks Collection
This project implements in C++ a bunch of known Neural Networks. So far the project implements: LVQ in several variants, SOM in several variants, Hopfield network and Perceptron. Other neural network types are planned, but not implemented yet. The project can run in two modes: command line tool and Python 7.2 extension. Currently, Python version appears more functional, as it allows easy interaction with algorithms developed by other people. -
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Unused
A command line tool to identify unused code
Unused identifies unused code in Rails, Phoenix, and other types of applications, improving developer productivity. By default, unused leverages a different memory allocator called mimalloc. For my local benchmarks, it speeds up execution by a significant amount (which is documented in the commit introducing mimalloc), but currently runs into sporadic issues on Apple M1 devices. If you run into issues with segmentation faults, consider reinstalling unused with the stock Rust allocator. It is... -
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Semantic
Parsing, analyzing, and comparing source code across many languages
semantic is a Haskell library and command line tool for parsing, analyzing, and comparing source code. Run semantic --help for complete list of up-to-date options. Semantic uses tree-sitter to generate parse trees, but layers in a more generalized notion of syntax terms across all supported programming languages. We'll see why this is important when we get to diffs and program analysis, but for now let's just inspect some output. It helps to have a simple program to parse. Symbols are named... -
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TSA_CRAFT
Automatic command line tool for TSA data analysis
DSF is a high-throughput platform of TSA assay to screen various conditions that affect protein stability. To facilitate TSA data analysis, we developed an automatic tool "TSA-CRAFT". TSA-CRAFT was developed by integrating PERL script and Gnuplot. PERL scripts manage the entire workflow and data processing procedures of TSA data analysis. On the other hand, Gnuplot takes over the curve fitting and result presentation works. All analysed results are coded in an html file that can be easily... -
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ADR Tools
Command-line tools for working with Architecture Decision Records
A command-line tool for working with a log of Architecture Decision Records (ADRs). ADRs are stored in a subdirectory of your project as Markdown files. The default directory is doc/adr, but you can specify the directory when you initialize the ADR log. Create a directory named doc/architecture/decisions containing the first ADR, which records that you are using ADRs to record architectural decisions and links to Michael Nygard's article on the subject. Create a new ADR file that is flagged... -
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cocolib / light field suite
CUDA library for continuous optimization and light field analysis
Library for continuous convex optimization in image analysis, together with a command line tool and Matlab interface. Implements several recent algorithms for inverse problems and image segmentation with total variation regularizers and vectorial multilabel transition costs. Also included is a suite for variational light field analysis, which ties into the HCI light field benchmark set and givens reference implementations for a number of our recently published algorithms. *** NOTE: ... -
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ipgrep
Copies IP packets from source to destination PCAP files.
IPGREP is a command line tool to grep IP packets out of PCAP files. It provides basic filter for IP version and IP addresses. It is written in pure C without LIBPCAP, so it should run faster. -
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FW1-Loggrabber is a command-line tool to grab logfiles from Checkpoint FW-1 remotely using Checkpoints LEA (Log Export Api), which is one part of Checkpoints OPSEC API.
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serlogger
serial logging tool with time stamps and hotkey and automation support
a flexible serial logging tool, runs on GNU/Linux, which can be useful for timing analysis and logging capture of embedded system development. -
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FREJ stands for "Fuzzy Regular Expressions for Java" - it is a command-line tool and library which allow you easily compare strings with patterns disregarding nasty typos and considering several variants (like "Barack Obama", "B.H.Obama" etc.) Project sources are moved to github: https://github.com/RodionGork/FREJ
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DR14 T.meter
Compute the DR14 of a given audio file according to the procedure desc
Introduction to DR14 T.meter DR14 T.meter is a free and opens source command line tool for computing the Dynamic Range of your music according to the procedure used in the off-line meter released by the Pleasurize Music Foundation. This tool is very useful to measure how is loud your music and for understanding that a good quality album always has also a good dynamic, and it's also useful for understanding the effects of the so called loudness war. Dr14 t.meter is released under the... -
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NGSbinningpytools
Python tools for binning NGS scaffolds to various genomes.
Next generation sequencing has opened new avenues for sequencing prokaryotes which were difficult or either impossible to culture. Now, it is possible to sequence all organisms present in a metagenomic community. However, a critical problem is to determine the host organism for each genomic fragment present in the dataset. This project provides the computational tools for assigning the organismal identity for each genomic scaffold in the given dataset. For more detailed documentation... -
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NOTE: The library code compatible with audacity has migrated to https://github.com/claytonotey/libsbsms A subband sinusoidal modeling library/command line tool/gui for time stretching and pitch scaling audio. Download the sbsms package for the source or the win32/mac wxSBSMSPlayer package for the gui binaries.
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TxtStyle
Command-line tool for colorizing log files based on regex.
TxtStyle is a command line tool colorizing output of console programs. It makes it easier to visually scan log files or can simply be used to prettify output of console applications. -
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BCP
NGS analysis tool
BCP is a command-line tool ideated to analyze NGS data, also offering a wrapper for some common NGS software, including Fastx and Samtools. It is oriented mainly towards targeted resequencing experiments, with a set of functions for general purposes. BCP also includes a function for breast cancer risk estimation, based on the Gail model, using both clinical and genome data. -
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AntiDef
Anti defacement command line tool
AntiDef is written in order to handle with defacement attacks. This tool written in Java in a fast-and-dirty manner; However is works. This tool is working straight forward. Server administrator should run the application with the following specific parameters: path to the copy of the web site (source), path to the application directory, path to log directory and few more optional parameters. This tool compares the source and the destination files, then copies the "defaced" files if... -
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compeo++
compeo++ - Manage Flytec/ Bräuniger Instruments
...It concentrates on supporting the essential instrument management use cases: - Browse and export track logs. - Browse, export and import waypoints. - Create and browse routes. It does not aim at being a full-fledged flight-management and analysis tool - simply because such tools are available online all over the net (e.g. Leonardo). Additional import formats may be added in the future. -
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DReport
Console tool for creating directory level reports.
Tool to create a CSV report on directory hierarchies. Listing includes date range. Great for spreadsheet analysis to govern file archival. Another STDNOJ Project. By R.A Nagy -
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Diva is a command-line tool for dispersal-vicariance analysis, a simple method for inferring the distributional history of organisms (Ronquist, F. 1997. Systematic Biology 46:193-201).
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A small command line tool to process streams of numbers and spit out the running total, bin the results or merge duplicates. Supports arbitrary precision numbers. ocdf is named for the cumulative distribution function in probability.
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UTSQ is a Java command line tool for logging UT player's online performance over time. It queries an UT server for player's current frags, kills, deaths, ping, team and calculates FPH, efficiency and Rank and illustrates the first 3 as bars in a .html
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"No comment!" is a command-line tool that generates various comment-related metrics for source code files (e. g. comment density, blank lines per file)
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Graphical User Interface (GUI) for Aruba's WifiCfg (v1.4) command line tool. Especially useful for BartPE with WolfWare’s WZCLite plugin. Manage multiple connection profiles, check Windows status, connect, ping to verify connection, disconnect.