Search Results for ".vcf"
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Showing 8 open source projects for ".vcf"
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fcGENE: Genotype format converter
Format converting tool for genotype Data (e.g.PLINK-MACH,MACH-PLINK)
Main application is twofold: first to convert genotype SNP data into formats of different imputation tools like PLINK MACH, IMPUTE, BEAGLE and BIMBBAM, second to transform imputed data into different file formats like PLINK, HAPLOVIEW, EIGENSOFT and SNPTEST. Readable file formats: plink-pedigree (ped and map), plink-raw, plink-dosage, mach , minimac, impute, snptest, beagle and bimbam. Similarly all kinds of imputation of outputs are also accepted. Formats which can be generated by... -
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VCF Explorer
A desktop application for analyzing whole genome VCF files
VCF-Explorer can be run at different environments and computational platforms ranging from a standard laptop to an advanced server. -
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denovo_hit
Outputs potential denovo variants from VCF given pedigree information.
Program takes variants calls and determines if the call is novel for a child compared to parents. Program can handle both annotated and unannotated VCF files, however output file is not compatible with GATK's snpEff, so you should annotate prior to using denovo_hit. Usage: ./denovo_hit <VCF file> <PED file> Output: ./potential_denovo.txt To compile: g++ -std=c++11 denovo_hit.cpp -o denovo_hit Please see files for example VCF file, and pedigree file. Format VCF file (tab delimited): CHROM, POS, ID, REF, ALT, QUAL, FILTER, INFO, FORMAT, SAMPLE_ID, ... ... -
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The Visual Component Framework is intended as a cross platform class library, that supports, among other things, an advanced GUI framework strongly influenced by Borland's Visual Component Library and Java's Swing framework.
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A set of tools for working with VCF files, such as those generated by the 1000 Genomes Project. This project is migrating to github: https://vcftools.github.io/
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ligth-genome-view
small genome viewer local wxWidget c++
...I am a newbie in bioinformatics. Hope this will give people help when build bio-GUI project using c++. This software is used to view genome including many type files,like bed,gff,gtf,vcf,fasta,bam. -
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The VCF Builder is an advanced development tool for creating C++ applications, and supporting a wide number of plugins for enhancing it's functionality. While the VCF Builder is capable of creating generic C++ applications, it's forte is building GUI ap
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A command line utility for searching vCard (version 3.0) files which hold multiple contacts. The goal it to provide the user a convenient and easy to use means of accessing personal contact information, particularly phone numbers, in a desktop setting.
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