Search Results for "bio-bwa-files"
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Showing 78 open source projects for "bio-bwa-files"
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SKUDONET ADC, operates at the application layer, efficiently distributing network load and application load across multiple servers. This not only enhances the performance of your application but also ensures that your web servers can handle more traffic seamlessly.
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Exact Payments delivers easy-to-integrate embedded payment solutions enabling you to rapidly onboard merchants, instantly activate a variety of payment methods and accelerate your revenue — delivering an end-to-end payment processing platform for SaaS businesses.
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phpipam
phpipam open-source IP address management
phpipam is an open-source web IP address management application (IPAM). Its goal is to provide light, modern and useful IP address management. It is php-based application with MySQL database backend, using jQuery libraries, ajax and some HTML5/CSS3 features. -
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The Simplest Manual Counter
Manual counter with the keyboard or the mouse on images
The only open source counter to count any items the simplest and easiest way with the keyboard, or the mouse specifically on images. After associating a key to each item, or a predefined graphical symbol for images, pressing the key or clicking on the image increments its associated counter, and displays (for the images) the symbol at the mouse's pointer location. Such a project is so simple a child could use it! -
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PINCIS
PINCIS.pl is a Perl bioinf. script to analyze PICS data
PINCIS.pl (PIcs N-/C-terminal Inferred Substrates perl script) is a small, command line tool to designate and analyze PICS (Schilling et al., Nat. Protocols, 2011) data to gain the prime and non-prime site specificity of proteases. Thus, the script filters given peptide lists for library peptides (generated by the digestion protease in the proteomics workflow rather then the protease of interest) and prints out lists of inferred N- and C-terminal cleavage window extensions which can be... -
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wxProdOp
NMR Product Operator Calculator
The program does nmr product operator calculations for one, two, three and four spins. Receiver phase cycling is possible in conjunction with pulse phase cycling to simulate coherence pathway selection. An extensive manual and help files are included. Currently running under Linux and Windows. -
Whether natural disaster, cyberattack, or plain-old human error, data can disappear in the blink of an eye. ConnectWise BCDR (formerly Recover) delivers reliable and secure backup and disaster recovery backed by powerful automation and a 24/7 NOC to get your clients back to work in minutes, not days.
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bugzilla-de
German Template for Bugzilla
German Template for Bugzilla. Bugzilla is a bugtracking system by Mozilla.org. This project contains the files needed for a German interface for it. To install, extract the "de" directory in the package, and place it and its contents into Bugzilla's "template" directory, so that it sits alongside the "en" directory Bugzilla ships with. -
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As of 2018-06-28, this project has moved to https://github.com/AdamaJava. This copy of the code will remain but all new code updates and releases will be from the new site. Java code developed by the Australian ICGC team for operating on next-generation sequencing data. This code is currently being maintained and expanded by the QIMR Berghofer Genome Informatics team (http://www.qimrberghofer.edu.au/lab/genome-informatics/) More details and documentation can be found on the...
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miARma-Seq
a A suite designed to study mRNAs, miRNAs and circRNAs
miARma-Seq, which stands for miRNA-Seq And RNA-Seq Multiprocess Analysis, is a suite designed to study mRNAs, miRNAs and circRNAs. It is able to perform differential expression analysis, miRNA-mRNA target prediction and functional analysis among others. Most importantly, it can be applied to any sequenced organism, and it can be initiated at any step of the workflow. As a stand-alone tool, is both easy to install and extremely flexible in terms of its use. It brings together... -
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gablock
Easy Block Diagram Creator using YAML and GraphViz
gablock is a Block Diagram creation tool. Block Diagrams are described in easy-to-write YAML files. These files are translated into the DOT language used by GraphViz. GraphViz is then called to produce a block diagram in any format GraphViz supports, such as PNG, JPEG, SVG, or PDF. -
Our 360 recognition & rewards platform enables everyone (peer to peer & manager to employees alike) to send meaningful recognition rooted in core values. Nectar has the most extensive rewards catalog so users can choose from company branded swag, Amazon products, gift cards or custom reward types. Integrate with your other tools like Slack and Teams to make sending recognition easy. We support top organizations like MLB, SHRM, Redfin, Heineken and more.
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MOIRAI
Simple Scientific Workflow System for CAGE Analysis
Cap analysis of gene expression (CAGE) is a sequencing based technology to capture the 5’ ends of RNAs in a biological sample. After mapping, a CAGE peak on the genome indicates the position of an active transcriptional start site (TSS) and the number of reads correspond to its expression level. CAGE is prominently used in both the FANTOM and ENCODE project. MOIRAI is a compact yet flexible workflow system designed to carry out the main steps in data processing and analysis of CAGE data.... -
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JOPUX
JOPUX - a flexible and scalable application platform!
JOPUX is a Linux-distribution and family of free open source Linux appliances, built on openSUSE and Gnome, and designed for quickly setup and running Linux on servers and workstations. With a fully documented library of resources, JOPUX allows the customization of every aspect of a Linux installation and cloning, including administration and the rapid integration with third-party applications JOPUX provides more developer power while making the user experience all the more friendly.... -
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Krona
Hierarchical data browser
Krona allows hierarchical data to be explored with zoomable HTML5 pie charts. Krona charts can be created using an Excel template or Krona Tools, which includes support for several bioinformatics tools and raw data formats. -
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Corbata
CORe microBiome Analysis Tools
Corbata is a set of statistical tools that can be used to analyze the core microbiome across a set of samples. -
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Corrupt Open Office Recovery
Recover unopenable corrupt Open Office files or salvage the text.
A simple GUI program that attempts to fully recover unopenable corrupt Open Office files or at least salvage the text. The program now offers an Alternatives menu with links to advice, services and software alternatives for recovery, including a shortcut to Recoveronix File Repair Online's corrupt file recovery service. Using the coupon "S2SERVICES" after a demo recovery of an Open Office odt or ods file will allow for a free full recovery until Nov 1, 2013, a $39 value. Also the program... -
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Corrupt DOCX Salvager
Extract text from corrupt DOCX files where Word itself fails.
Previously known as Damaged DOCX2TXT, this GUI program will extract text from damaged/corrupted Word 2007 - 2013 DOCX format documents. DOCX files are actually zipped collections of mostly XML files. The main text in docx files is found in document.xml file in the collection. Corrupt DOCX Salvager uses 7Zip, an unzipper that sometimes unzips partially corrupt document.xml files despite reporting an error. XML as a format is unforgiving of data corruption but Corrupt DOCX Salvager uses... -
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Integrated Hospital Information System. PHP,mySQL,PostgreSQL. Surgery, Nursing,Outpatient,Wards,Labs, Pharmacy, Security,Admission,Schedulers, Repair, Communication & more. Multilanguage, WYSIWYG forms, userconfig, embedded workbots. Modular & scalab
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iMir
Integrated pipeline for HT miRNA-Seq data analysis
Processing of smallRNA-Seq data to gather biologically relevant information requires application of multiple statistical and bioinformatics tools from different sources, each focusing on a specific step of the analysis pipeline. The analytical workflow can be challenging for the continuous interventions by the operator, a critical factor when large numbers of datasets need to be analyzed at once. To allow a flexible and comprehensive analysis of smallRNA-Seq data we designed a novel modular... -
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CViT - Chromosome Viewing Tool. A collection of Perl scripts that enable quick visualizations of features on linkage groups, psuedochromosomes or cytogenetic maps. Intended for whole-genome views of data but can be used to create images of single chromosomes/linkage groups, contigs, or BACs, or even proteins -- any feature that has a location on a backbone. Handles most standard genetic/genomic coordinate systems. Reads GFF3 data and produces a PNG or SVG image.
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docx2txt
Perl based utility to extract formatted text content from MS Docx file
Docx2txt is a Perl based command-line utility to convert (even corrupted) Microsoft docx documents to reasonably formatted text files, along with appropriate character conversions. Apart from Perl it also requires a command line unzipping program like unzip/7z/pkzipc/wzunzip. -
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seppdflatex
Build a large LaTeX book with separate linked chapters
... chapter files using zr-ref and xr packages from CTAN. But you have to write the correct LaTeX source. The script seppdflatex does the compilation and formatting of Table of Contents and such-like and separates out the chapters as standalone PDF files. The script uses the free software pdftk and pdfsam-console, as well as a bunch of handy CPAN modules, which you will need to install first. -
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Russian localization for Bugzilla
Russian localization for Bugzilla
Russian Template for Bugzilla. Bugzilla is a bugtracking system by Mozilla.org. This project contains the files needed for a Russian interface for it. To install, extract the "template/ru-RU" directory in the package, and place "ru-RU" directory and its contents into Bugzilla's "template" directory, so that it sits alongside the "en" directory Bugzilla ships with. -
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q pipeline manager
q: integrated platform for pipeline configuration and management
... assembled and managed, including dependency tracking, parallelization, and pipeline-level monitoring, error recovery, and data protection. Pipelines are constructed from modular script files, with job definitions and results stored in easily retrieved job files. A web interface facilitates job submission and monitoring, with the complete pipeline exportable for full transparency. -
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Value Change Dump to Text File Converter
Converts value change dump files to a plain-text table.
Vcd2txt is an utility to parse value change dump (VCD) files and convert them to an easily readable (plain-text) table of signals. In contrast to GTKwave, simulation of hardware circuits can be performed fully on the command line. -
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QDepo
QDepo - formerly known as TPDA - Query Repository Tool
QDepo - A desktop application for retrieving and exporting data from relational database systems to spreadsheet files, also formerly known as "TPDA - Query Repository Tool". The graphical user interface is based on wxPerl or PerlTk. The main feature of the application is the SQL query repository management. The repository consists from a collection of XML files that ca easily be moved or copied to other computers. The supported formats are Excel (.xls), ODF and CSV. The Database... -
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googleBookCreat
Creates PDF files suitable for publishing on Google Books
This is a wrapper to the "htmldoc" program that creates PDF files with Table of Contents, for publishing "Journals". Pictures are automatically published as well as cover images.