Search Results for "bio-bwa-files"
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Showing 1316 open source projects for "bio-bwa-files"
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Bright Data - All in One Platform for Proxies and Web ScrapingBright Data offers the highest quality proxies with automated session management, IP rotation, and advanced web unlocking technology. Enjoy reliable, fast performance with easy integration, a user-friendly dashboard, and enterprise-grade scaling. Powered by ethically-sourced residential IPs for seamless web scraping.
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MySQLTuner
Script written in Perl to assist with MySQL configurations
MySQLTuner is a script written in Perl that will assist you with your MySQL configuration and make recommendations for increased performance and stability. The current configuration variables and status data is retrieved and presented in a brief format along with some basic performance suggestions. MySQLTuner supports ~300 indicators for MySQL/MariaDB/Percona Server in this last version. MySQLTuner is maintained and indicator collect is increasing week after week supporting a lot of... -
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latexindent.pl
Perl script to add indentation to LaTeX files
Perl script to add indentation (leading horizontal space) to LaTeX files. It can modify line breaks before, during and after code blocks; it can perform text wrapping and paragraph line break removal. It can also perform string-based and regex-based substitutions/replacements. The script is customizable through its YAML interface. latexindent.exe is a standalone executable file that does not require a perl installation. A nice way to test the script is to navigate to the test-cases directory... -
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MView
Extract and reformat a sequence database search or multiple alignment
NOTE: The MView repository and web pages have moved to: https://github.com/desmid/mview https://desmid.github.io/mview/ Release tarballs will continue to be uploaded to SourceForge. ---- MView is a command line utility that extracts and reformats the results of a sequence database search or a multiple alignment, optionally adding HTML markup for web page layout. It can also be used as a filter to extract and convert searches or alignments to common... -
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Anti-Spam SMTP Proxy Server
Anti-Spam SMTP Proxy Server implements multiple spam filters
The Anti-Spam SMTP Proxy (ASSP) Server project aims to create an open source platform-independent SMTP Proxy server which implements auto-whitelists, self learning Hidden-Markov-Model and/or Bayesian, Greylisting, DNSBL, DNSWL, URIBL, SPF, SRS, Backscatter, Virus scanning, attachment blocking, Senderbase and multiple other filter methods. Click 'Files' to download the professional version 2.8.1 build 24261. A linux(ubuntu 20.04 LTS) and a freeBSD 12.2 based ready to run OVA of ASSP V2... -
Business Continuity Solutions | ConnectWise BCDRWhether natural disaster, cyberattack, or plain-old human error, data can disappear in the blink of an eye. ConnectWise BCDR (formerly Recover) delivers reliable and secure backup and disaster recovery backed by powerful automation and a 24/7 NOC to get your clients back to work in minutes, not days.
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SDT-weather-com
Squeezebox SuperDateTime Weather.com Plugin
This is a plugin for Logitech Media Server Squeezebox players. It provides the SuperDateTime plugin functionality originally developed by Greg Brown using weather.com data. Repository URL: http://sourceforge.net/projects/sdt-weather-com/files/repo.xml or http://downloads.sourceforge.net/project/sdt-weather-com/repo.xml -
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SAM (Sequence Alignment/Map) is a flexible generic format for storing nucleotide sequence alignment. SAMtools provide efficient utilities on manipulating alignments in the SAM format. The main samtools source code repository moved to GitHub in March 2012. For ongoing development since then, see http://github.com/samtools/samtools
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exiftool
Read, write and edit metadata
Perl library and command-line application for reading, writing and editing meta information (EXIF, IPTC, XMP, and more) in a wide variety of file formats (JPEG, TIFF, PNG, PDF, RAW, and more). -
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Greenstone
Digital Library Software
Greenstone is a complete digital library creation, management and distribution package created and distributed by the New Zealand Digital Library Project. There are two major versions of the software. Greenstone 3 is under active development, and is recommended for download. We also provide maintenance releases for its forerunner, Greenstone 2. Featured download not what you're looking for? Click "Browse all files" to access binaries and source releases of both versions. -
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phpipam
phpipam open-source IP address management
phpipam is an open-source web IP address management application (IPAM). Its goal is to provide light, modern and useful IP address management. It is php-based application with MySQL database backend, using jQuery libraries, ajax and some HTML5/CSS3 features. -
All-in-One Payroll and HR PlatformWe design our technology to make workforce management easier. APS offers core HR, payroll, benefits administration, attendance, recruiting, employee onboarding, and more.
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ImageMagick
Display, convert, and edit raster image and vector image files
ImageMagick® is a free and open-source software suite for displaying, converting, and editing raster image and vector image files. It can read and write over 200 image file formats, and can support a wide range of image manipulation operations, such as resizing, cropping, and color correction. ImageMagick is written in C and is available for a wide range of operating systems, including Linux, macOS, and Windows. It can be used as a standalone application, or as a library that can... -
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Systems Biology Markup Language (SBML)
A file format for exchanging computational models in systems biology
The Systems Biology Markup Language (SBML) is an XML-based description language for representing computational models in systems biology. Visit the project web site to learn more. -
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Quiz/Survey/Test - QST
A Free, complete, enterprise grade, open source exam management system
QST, the worlds unparalleled open source online/lan assessment software. From a quick quiz on your phone to very large scale, high stakes, proctored desktop testing, we make it easy/secure/economical. Our intuitive design contains features (Immediate detailed results, Create/Export/Import/Convert Questions, WYSIWYG/Math-Chemistry/Basic Editors, Question/Item Bank, Multiple Question Types, Multiple Delivery Styles, Multiple Delivery/Results Options, Adaptive/Branching Questions, Randomly... -
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The Sashimi project hosts the Trans-Proteomic Pipeline (TPP), a mature suite of tools for mass-spec (MS, MS/MS) based proteomics: statistical validation, quantitation, visualization, and converters from raw MS data to the open mzML/mzXML formats.
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Screen Squid
Log analyser for Squid access.log
Screen squid is web-based interface for viewing reports based on Squid proxy server log files. It can be accessed from web-browser through more than 50 reports. No extra files, only DB. All reports generated "on-the-fly". And we got personal cabinet for each user/group. -
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File Read Test is a tool that reads disk files or directories and stops on the first read error. A second tool, Quick Disk Test, fills a disk with test data and verifies that it can be read back without errors.
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Free DELTA
Software tools for processing taxonomic descriptions in DELTA format
The Free DELTA Project is a free, open-source, software alternative for a generic system to the processing of taxonomic descriptions based on the DELTA (DEscription Language for TAxonomy) format. -
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Small HTTP server
Universal server
It is not only a web server, it is also Mail server, DNS server, FTP server, Proxy server, VPN server and client... All in one! This program will help you to open all the possibilities Internet can offer for your company - public site, provide Internet access and personal mailboxes for each employee! HTTP server. Server Side Includes. Regular expression in SSI. CGI interface for scripts (Executable files; Perl,PHP, or another external interpreters) ISAPI... -
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pgn4web
javascript chess games viewer for websites, blogs and live broadcasts
pgn4web is a javascript chess games viewer for websites, blogs and live broadcasts. "pgn4web has a clean design, and is easily integrated and configured in wordpress. And yet, below that layer of simplicity, it has enough bells and whistles to allow for more baroque needs and taste. A truly great plugin." GM Tiger Hillarp, using the pgn4web plugin for wordpress on his site chess at the bag of cats, May 2013. "We wanted a live viewer that could work on tablets and mobile phones. pgn4web... -
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Source code from the Research Institute for Signals, Systems and Computational Intelligence http://fich.unl.edu.ar/sinc
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NCO netCDF Operators
Command-line operators for netCDF and HDF files
The netCDF Operators, or NCO, are a suite of file operators which facilitate manipulation and analysis of self-describing data stored in the (freely available) netCDF and HDF formats. Volunteers welcome! See homepage for details and download links. -
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EvidentialGene
Evidence Directed Gene Construction for Eukaryotes
EvidentialGene is a genome informatics project, "Evidence Directed Gene Construction for Eukaryotes", to construct high quality, accurate gene sets for animals and plants, developed by Don Gilbert at Indiana University, see http://arthropods.eugenes.org/EvidentialGene/ Construction refers to the combination of classical gene prediction, and more recent gene assembly (de-novo and genome-assisted) methods. The basic Evigene methods involve using available best-of-breed gene prediction and... -
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In addition to RPKM (Reads Per Kbp per Million reads) values, RACKJ computes read counts for exons and splicing events. In so doing, it is feasible to compare two samples and identify genes with most significant difference in exon(splicing)-level.
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csv2ldif2 is a command line tool written in perl that converts CSV files to LDIF files. Features: Platform independent, reads from STDIN and writes to STDOUT, ignoring/selecting specific fields of the CSV, choosing a custom base-dn and much more!
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Mendel’s Accountant is a biologically realistic, forward-time, parallel, numerical simulation program which models genetic change within a population, as affected by mutation and selection.