Search Results for "python tools" - Page 5
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Showing 176 open source projects for "python tools"
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Feather
Binary data frame storage for Python, R, and more
Feather is a fast, interoperable binary data frame storage format designed for efficient data exchange between analysis tools. It provides columnar serialization for data frames, making read and write operations faster than many text-based formats. The project was built to make sharing data across languages such as Python and R easier. Feather is powered by the Apache Arrow columnar memory specification, which helps it represent numeric, string, categorical, date, timestamp, boolean, and binary data efficiently. ... -
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Inviwo
Interactive Visualization Workshop
Inviwo is a modern, open-source visualization framework designed for interactive visual data analysis and scientific computing. Built in C++ with a modular, extensible architecture, Inviwo combines a visual editor (for creating data pipelines) with a powerful runtime engine that supports real-time rendering, interaction, and GPU-accelerated processing. It’s widely used in scientific domains for building and sharing visualizations of complex data such as medical imaging, simulations, and... -
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Olex2 is visualisation software for small-molecule crystallography developed at Durham University/EPSRC. It provides comprehensive tools for crystallographic model manipulation for the end user and an extensible development framework for programmers. The project has been supported by Olexsys Ltd since 2010.
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GEOMS2
Geostatistics and geosciences modeling software
GEOMS2 is a geostatistics and geosciences modeling software. Provides interface for grid (mesh), point, surface and data (non-spatial) objects. It has a 3D viewer and 2D plots using the well known Python engines Mayavi and Matplotlib. It has several functions to manipulate your data as well as provide univariate and multivariate analysis. NOTE: The software is still an early beta. Please tell us if you found a bug. Download datasets for students of Geostatistics 2017 (Petroleum... -
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LaueTools
open source python packages for X-ray MicroLaue Diffraction analysis
LaueTools is an open-source project for white beam Laue x-ray microdiffraction data analysis including tools in image processing, peaks searching & indexing, crystal structure solving (orientation & strain) and data & grain mapping visualisation. Python 3 Code and new features are now at: https://gitlab.esrf.fr/micha/lauetools -
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GeoNotebook
A Jupyter notebook extension for geospatial visualization and analysis
...It integrates with GeoJS and other geospatial services to enable rich, interactive map rendering, layer control, and GIS data manipulation alongside traditional code and markdown cells in a Jupyter environment. Users can execute Python geospatial analysis and immediately visualize results on slippy web maps, allowing them to explore, annotate, and interpret large spatial datasets without leaving the notebook. GeoNotebook bridges the gap between data science workflows and GIS exploration by combining the flexibility of interactive notebooks with browser-based map display driven by a Python backend and WebGL/Canvas tools. -
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JavaScript Enhancements
JavaScript Enhancements is a plugin for Sublime Text 3
JavaScript Enhancements is a Sublime Text plugin that boosts JavaScript development with features like code intelligence, autocompletion, project management, and Node.js integration. It aims to turn Sublime into a powerful IDE-like environment for JavaScript developers, particularly those working on full-stack projects. -
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Kalibro for Calibration & Maintenance
Calibration Control and Maintenance Management
Kalibro is an open source free software to manage devices and tools for calibration and maintenance records. It helps you to keep inventory and reminds you the scheduled dates. Kalibro also helps you to satisfy the requirements of the Quality Management Standards like ISO9001, AS9100 and TS16949. Manufacturing, Quality and IT departments of small/medium sized companies are targeted to use Kalibro. You do not need to use spread sheet files to save your critical calibration records. See the... -
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Collaborative Computing Project for NMR
Collaborative Computing Project for NMR (CCPN)
The Collaborative Computational Project for NMR (CCPN) provides tools and knowledge to maximise the impact of the biological NMR studies. The CCPN software facilitates data analysis and software integration. The project actively promotes the exchange of knowledge and provides training and best practices for the NMR community. CCPN also has a leading role in the development of a NMR data-sharing standard and coordination of NMR instrumentation proposals for RCUK and BIS. The 28 partners of... -
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Krisk
Statistical Interactive Visualization with pandas+Jupyter integration
Krisk brings Echarts to the Python Data Science Ecosystem, and helpful tools for high-level statistical interactive visualization. -
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Tessera
A dashboard front-end for graphite.
Tessera is a front-end interface for the Graphite metrics system, which provides a large selection of presentations, layout, and interactivity options for building dashboards. The biggest key differences between Tessera and other frontends are the separation of queries from presentations, and the ability to apply arbitrary transformations to the presentations & queries, allowing for a large degree of interactivity. Tessera is initially focused on information presentation - it does not NOT... -
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colorview2d
Extendible 2D color plotting tool.
Visualize and analyze 3D data files using 2D colorplots. Inspired by spyview. Written in python. -
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MerDAQ
A DAQ solution in Python 2 for your Ardruino
MerDAQ is a data acquisition GUI and other tools for collecting and storing time dependent. Originally designed to collect 4 temperature data vs. time and plot one of the temperatures in real time with matplotlib. Ideal for use with Arduino. -
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Py3DN
Morphometric analysis and visualization of the 3D structure of neurons
...The application was developed in Python and uses Blender (an open source program) to produce detailed 3D representations of raw and processed data. Py3DN is described in the paper: Aguiar P et al, "Versatile morphometric analysis and visualization of the three-dimensional structure of neurons", Neuroinformatics, 2013, 11(4):393-403 doi: 10.1007/s12021-013-9188-z -
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SPIW - Scanning Probe Image Wizard
Scanning Probe Image Wizard - MATLAB Toolbox
...A related open-source project SPIEPy (https://pypi.python.org/pypi/SPIEPy/) is developing a python library to for automated SPM imaged enhancement. SPIEPy brings many SPIW algorithms to the Python user. -
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A set of tools managed by Sustainable Software for identity and membership management within organisations, built on Zope and Plone.
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COAR-DMS
DMS for linux, C++ library, server, webUI , SOAP
COAR-DMS is document management system for 32/64 bit. linux. Acts as library, server and tools. Library features: - storage management, free pages recycling - transaction log - indexing: full text, tags, metadata, document attributes - inverted index - versioning, collaboration - document trees, trees versionning - folders - plugins for auth (PAM,LDAP), db, file types plugins - tags - metadata (key value pairs) - object level security, folders documents ACL, - unix like security (rwx), special authorities - from thousands to tens of billions of documents - dashboard (working copies, new documents) - electronic signs - search statement, syntax like SQL - multithreaded, multiprocess library, Servers: - native HTTP server (libmicrohttp) - SOAP server - WebDAV(planed) - Indexer Python API WebUI GWT, JSP, SOAP-API -
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UV-CDAT
Ultrascale Visualization Climate Data Analysis Tools
Ultrascale Visualization Climate Data Analysis Tools (UV-CDAT), is a powerful and complete front-end to a rich set of visual-data exploration and analysis capabilities well suited for climate-data analysis problems. -
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scipion-xmipp
Image processing framework to integrate EM software packages.
Scipion is an image processing framework to obtain 3D models of macromolecular complexes using Electron Microscopy (3DEM). It integrates several software packages and presents an unified interface for both biologists and developers. Scipion allows to execute workflows combining different software tools, while taking care of formats and conversions. Additionally, all steps are tracked and can be reproduced later on. Xmipp is a well-known package in the EM image processing. It is integrated... -
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ADOMA stands for: Alternative Display Of Multiple Alignment. ADOMA can create four different displays of a multiple sequence alignment: a ClustalW alignment in HTML format, a simplified ClustalW alignment in HTML and/or txt format and a colored ClustalW alignment in HTML format. For examples of these outputfiles check the screenshots. ADOMA uses ClustalW to create the multiple alignment from DNA or protein sequences and displays them slightly different than the normal output of ClustalW....
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iMir
Integrated pipeline for HT miRNA-Seq data analysis
Processing of smallRNA-Seq data to gather biologically relevant information requires application of multiple statistical and bioinformatics tools from different sources, each focusing on a specific step of the analysis pipeline. The analytical workflow can be challenging for the continuous interventions by the operator, a critical factor when large numbers of datasets need to be analyzed at once. To allow a flexible and comprehensive analysis of smallRNA-Seq data we designed a novel modular... -
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Optimal BPM
The beat of your business
[See the files section for installation instructions] Optimal BPM™ is a project that aims to create an easy-to-use Business Process Management system (BPM) and tools. So far, only the tools, and only a data replication tool, Optimal Sync, has been released (available from the "files" page). But more is coming. It incorporates many different open source projects that relates to interoperability, transformation, context and process control. It has no business engine, instead it generates Python code and leaves the engine mechanics to its scripting engine. ... -
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Larch: Data Analysis for X-ray Spectra
Data Processing and Analysis for X-ray Spectroscopy and More
Larch is a scientific data processing language that is designed to be easy to use for novices and complete enough for advanced data processing and analysis. Larch provides a wide range of functionality for dealing with arrays of scientific data, and basic tools to make it easy to use and organize complex data. Larch has been primarily developed for dealing with x-ray spectroscopic and scattering data, especially the kind of data collected at modern synchrotrons and x-ray sources. Larch is written in Python and relies heavily on the standard tools for scientific computing with Python (numpy, scipy, matplotlib, and h5py). -
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Pathomx
Workflow-based data analysis built on IPython
Pathomx is a workflow-based tool for the analysis and visualisation of experimental data. Initially created as a tool for metabolomic data analysis is has been extended and can now be used for any scientific and non-scientific data analysis. -
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pyhome
Python scripts we use to organize our family business
pyhome consists of three command-line tools: 1) a CRM (fancy word for address book) 2) a Kanban task manager 3) bank account summary