The Sashimi project hosts the Trans-Proteomic Pipeline (TPP), a mature suite of tools for mass-spec (MS, MS/MS) based proteomics: statistical validation, quantitation, visualization, and converters from raw MS data to the open mzML/mzXML formats.
Various scripts used in sequencing, annotation and RNAseq analysis
This is a collection of various programs developed in the course of a genomics project, involving the Pseudomonas strain NCIMB10586
These include
* identifying and correcting errors in an (eg) pacbio genome sequence using illumina reads
* prokaryotic sequence/genome annotation
* RNAseq analysis - normalisation and collation of multiple samples as a group
* RNAseq visualisation
All scripts are provided on a 'best efforts' basis, however due to various system changes I do not...