Search Results for "validate"

miRPV is an Automated tool that allows users to predict and validate microRNA from genome/gene sequence. System Requirement CPU: AMD64 (64bit) Memory: 2Gb RAM Storage: 5Gb Ubuntu 18.04

In this study, we presented a quality control tool named PepDistiller to facilitate the validation of MASCOT search results. By including the number of tryptic termini, and integrating a refined false discovery rate (FDR) calculation method, we demonstrated the improved sensitivity of peptide identifications obtained from semitryptic search results. Based on the analysis of a complex data set, approximately 7% more peptide identifications were obtained using PepDistiller than using MASCOT...

...It uses bayesian inference with either manually specified or automatically estimated methylation probabilities of different cytosine context(not only CpG, CHH, CHG in Bisulfite-seq, but also GCH et.al. in other bisulfite treated sequencing) to determine genotypes and methylation levels simultaneously. It works for both of single-end and paired-end reads.Specificity and sensitivity has been validate by Illumina IM SNP array. In default threshold 30X data (Phred scale score > 20), it could detect 92.21% heterozygous SNPs with 0.14% false positive rate Cytosine calling is not only based on reference context, so it could detect non-reference cytosine context. Google group for help: http://goo.gl/zL7Nj

A Java library to facilitate SED-ML support for systems biology applications to read, validate, edit, and write SED-ML documents in compliance with MIASE guidelines. Also contains modules to execute simulation tasks and produce outputs. This project also contains the SED-ED editor application for SED-ML.

BIRAP (Bacterial Intergenic Region Analysis Pipeline) is an open source, easy to use Perl pipeline that can be used to re-annotate bacterial genomes using experimental data. The tool integrates expression profile derived from RNA-seq and/or proteogenomics, compares it with existing in silico annotation and helps validate annotation, identify novel protein coding regions, putative non-coding RNA as well as help correct er-rors in the existing annotation. The pipeline requires “pileup” output from SAMtools for RNA-seq data and peptide/ePST locus file (GFF) from the Proteogenomic Mapping tool for prote-ogenomics data along with the genome and existing in silico annotation. ...

Darwin Test is a software application to validate and correct records from standards Darwin Core 1.2, Darwin Core 1.4 and Darwin Core Archive. It also can generalize or delete coordinates in those records of the Darwin Core that are considered sensitive data.

Darwin Test is a software application to validate and check records from tables in a Darwincore1.2 or Darwincore1.4 format. It also exports the previous formats to the Darwin Core Archive standard and allows the inverse process. Also can transform tables from Darwincore1.2 to Darwincore1.4 and the inverse process from Darwincore1.4 to Darwincore1.2.

Darwin Test is a software application to validate and check records from tables in a Darwincore1.2 or Darwincore1.4 format. It also exports the previous formats to the Darwin Core Archive standard and allows the inverse process.

Darwin Test is a software application to validate and check records from tables in a Darwincore1.2 or Darwincore1.4 format. It also exports the previous formats to the Darwin Core Archive standard and allows the inverse process.

Darwin Test is a software application to validate and check records from tables in a Darwincorev2/Darwincorev4 format.

Software developed under MATLAB R14 environment. It's aim is to make the modeling of bacterial inactivation system and adjust a simulator to obtain new data of the experiment or validate the one that has been obtained at the laboratory.

Darwin Test is a software application to validate and check records from tables in a Darwincorev2/Darwincorev4 format.

Gestalt Biotec Corporation plans to release a set of drug-development system validation documents based upon the system development lifecycle model. These documents may be useful as examples to help validate your application in compliance with FDA regs.