Showing 4 open source projects for "validate"

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  • 1

    BisSNP

    Bisulfite-seq/NOMe-seq SNPs & cytosine methylation caller

    ...It uses bayesian inference with either manually specified or automatically estimated methylation probabilities of different cytosine context(not only CpG, CHH, CHG in Bisulfite-seq, but also GCH et.al. in other bisulfite treated sequencing) to determine genotypes and methylation levels simultaneously. It works for both of single-end and paired-end reads.Specificity and sensitivity has been validate by Illumina IM SNP array. In default threshold 30X data (Phred scale score > 20), it could detect 92.21% heterozygous SNPs with 0.14% false positive rate Cytosine calling is not only based on reference context, so it could detect non-reference cytosine context. Google group for help: http://goo.gl/zL7Nj
    Downloads: 3 This Week
    Last Update:
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  • 2
    jlibsedml
    A Java library to facilitate SED-ML support for systems biology applications to read, validate, edit, and write SED-ML documents in compliance with MIASE guidelines. Also contains modules to execute simulation tasks and produce outputs. This project also contains the SED-ED editor application for SED-ML.
    Downloads: 32 This Week
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  • 3
    Software developed under MATLAB R14 environment. It's aim is to make the modeling of bacterial inactivation system and adjust a simulator to obtain new data of the experiment or validate the one that has been obtained at the laboratory.
    Downloads: 0 This Week
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  • 4
    Gestalt Biotec Corporation plans to release a set of drug-development system validation documents based upon the system development lifecycle model. These documents may be useful as examples to help validate your application in compliance with FDA regs.
    Downloads: 0 This Week
    Last Update:
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