Search Results for "linux tool"
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Showing 19 open source projects for "linux tool"
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EASTL
EASTL, Electronic Arts Standard Template Library
EASTL stands for Electronic Arts Standard Template Library. It is a C++ template library of containers, algorithms, and iterators useful for runtime and tool development across multiple platforms. It is a fairly extensive and robust implementation of such a library and has an emphasis on high performance above all other considerations. If you are familiar with the C++ STL or have worked with other templated container/algorithm libraries, you probably don't need to read this. If you have no... -
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CrystalCMP
Easy-to-use tool for fast comparison of molecular packing
CrystalCMP is a code for comparing crystal structures. It is using two basic approaches for this purpose - the fingerprint and the RMSD approach. Result of the comparison is a similarity matrix and dendrogram. Read more here: J. Appl. Cryst. (2016). 49, 2172-2183 (https://doi.org/10.1107/S1600576716016058) and also here: J. Appl. Cryst. (2020). 53, 841-847 https://doi.org/10.1107/S1600576720003787 -
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UoMASM
A C++ Active Shape Model Library from the University of Manchester
A library and associated tools for building and searching with Active Shape Models (ASM). It builds on the VXL computer vision libraries. Includes a GUI tool to search new images with the ASM. Depends on: VXL, Qt (Version 4), UoMqVXL -
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Base62 Encode/Decode Utility
A tool for encoding/decoding to base62
the package chewingum contains two main programs: - base62 - chew They have been implemented in perl. Base62 has been coded in c++ too. chew has been written to shorten long decimal integer numbers into base62 strings. It's not a mere base conversion, because it doesn't use arithmetic inside its logic. In this way it can convert very long numbers into strings quickly, without overflows. For example if I want to share an id using an url, this will make the url shorter. the... -
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glint
A tool for finite state machine analysis and synthesis.
glint is a tool facilitating you in development of state-oriented control entities which supposed to be used in very broad areas of programming (e.g. state-oriented network protocols). glint saves you from pondering how your finite state machine should be organized, how many states it should have and what they should mean. You just tell glint how you would like your control entity to operate and glint returns to you the synthesised magic black box which implements the desired... -
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IVCon-TL 3D scene conversion tool
Converts between many 3D data formats
IVCon-TL can read and write a variety of 3D graphics file formats, converting from one to the other. Supported formats include 3DS, ASE, BYU, DXF, GMOD, HRC, IV, OBJ, OFF, POV, SMF, STL/STLA/STLB, TEC, TRI/TRIA/TRIB, UCD, VLA, WRL/VRML, XGL and more. -
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Genetic Algorithm File Fitter, GAFFitter for short, is a tool based on a genetic algorithm (GA) that tries to fit a collection of items, such as files/directories, into as few as possible volumes of a specific size (e.g. CDs or DVDs).
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COPEread
Connecting Overlapped Pair-End Reads
COPE (Connecting Overlapped Pair-End reads) is a method to align and connect the illumina sequenced Pair-End reads of which the insert size is smaller than the sum of the two read length.The connected reads can be used in genome assembly, resequencing and transcriptome research. The full citation: COPE: An accurate k-mer based pair-end reads connection tool to facilitate genome assembly Binghang Liu; Jianying Yuan; Siu-Ming Yiu; Zhenyu Li; Yinlong Xie; Yanxiang Chen; Yujian Shi; Hao... -
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PPSeq: Parallel NGS Analysis
Parallel Processing for Next-Generation Sequencing (NGS) Analysis
High-throughput next generation sequencing (NGS) technology has quickly emerged as a powerful tool in many aspects of biomedical research. However, along with its rapid development, the data magnitude and analysis complexity for NGS far exceed the capacity and capability of traditional small-scale computing facilities, such as multithreading algorithms on standalone workstations. To address this issue, here we present a solution using the ever-increasing supply of processing power by massive... -
MongoDB Atlas runs apps anywhereMongoDB Atlas gives you the freedom to build and run modern applications anywhere—across AWS, Azure, and Google Cloud. With global availability in over 115 regions, Atlas lets you deploy close to your users, meet compliance needs, and scale with confidence across any geography.
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OpenAIL
Open Artificial Intelligence Library
[Open Artificial Intelligence Library]. This library main goal is to provide a tool box to those who want to use algorithm such as neural network or genetics Algorithm and all algorithms that are commonly within the Artificial Intelligence field. -
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SMART (Shape Matching Algorithm Research Tool) enables you to implement 2D and 3D shape matching algorithms as plugins. Plugins can either be implemented in Java or as native plugins, i.e. in C/C++.
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T3S Tool
Learning Stochastic Discrete Event Systems
Stochastic discrete event system analysis and verification are essential in order to ensure reliability in such systems. However, models that cannot be constructed with an hand-made process need to be learned. Thus, the SDES toolbox proposes an automated solution that is embedded in Matlab to learning and analisis generalized semi-Markov processes. -
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PHPXref is a developers tool, written in Perl, that will cross reference and extract inline documentation from a collection of PHP scripts. It generates simple HTML output suitable for browsing offline.
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The first stage of development is do write a tool to anonymize packet capture files captured with libpcap. After that we will be integrating this with tcpdump to anonymize in real-time and analyze and look for its effect on different IDS's.
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ChIPOTle 2.0 is a user friendly tool for performing peak detection in ChIP-chip signal. The tool also has functions for probe sorting, signal normalization, replication merging, and multiple correction testing in a windows interface or *nix command line.
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Fiona is a tool to automatically analyze the interactional behavior of a given oWFN. It provides two techniques: it checks for the controllability of the given net by computing the interactiong graph and it calculates the operating guideline for the net.
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Command line encryption tool for one time, daemon, or stream data processing. Data stats, check sums, conversion to/from text. Data/keys from files, pipes, standard input. In-place/diverted processing or data-analysis-only. Random, file, password keys.
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Schedule Tool is a utility for predicting the duration of projects from a series estimated task times. This tool converts the estimates to probabilities of success, and convolves successive tasks to give an estimated date of completion.
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