Search Results for "command-line" - Page 2
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Showing 104 open source projects for "command-line"
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This project consists of various implementations of the Graphplan algorithm. At the moment we have two implementations of Graphplan: * Emplan - A C++ implementation for Linux, Windows and MacOS X * JavaGP - A Java implementation
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Genetic Programming Classifier is a distributed evolutionary data classification program. It uses the ensemble method implemented under a parallel co-evolutionary Genetic Programming technique.
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pycrc
CRC C source generator
pycrc is an easy to use CRC (cyclic redundancy check) calculator and C source code generator. The generated source code can be optimized for simplicity, speed or space. pycrc contains a long parameter list of common CRC models. The program is self contained and does not require installation. Apart from a python installation, it does not require other libraries to be installed. -
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GTkNN
GPU-based Textual kNN (GT-kNN)
The following code is a parallel kNN implementation that uses GPUs for the high dimensional data in text classification. You can use it to classify documents using kNN or to generate meta-features based on the distances between a query document and its k nearest neigbors -
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SWAPHI-LS: Alignment on Xeon Phi Cluster
Smith-Waterman long DNA sequence alignment on Xeon Phi clusters
The first parallel Smith-Waterman algorithm exploiting Intel Xeon Phi clusters to accelerate the alignment of long DNA sequences. This algorithm is written in C++ (with a set of SIMD intrinsic extensions), OpenMP and MPI. The performance evaluation revealed that our algorithm achieves very stable performance, and yields a performance of up to 30.1 GCUPS on a single Xeon Phi and up to 111.4 GCUPS on four Xeon Phis sharing a host. -
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PartWriter
A project designed to write sheet music.
The project is composed of two layers. The first layer is an artificial intelligence engine, partwriter, that writes music based on some heuristic. The second layer is the layer that defines the heuristic. The definition of this heuristic defines the type of music that partwriter will create. Currently (December 2012), the deepest layer is more or less complete. The author is now writing second layers of interest, namely species counterpoint heuristics according to Fux's Gradus Ad Parnassum. -
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The library for utilization of Minimal Quadtree format for storing very large sparse matrices. Please see the paper referenced below for the description of a problem. Corresponding papers: Tree-based Space Efficient Formats for Storing the Structure of Sparse Matrices (I. Šimeček, D. Langr, P. Tvrdík), In Scalable Computing: Practice and Experience, volume 15, 2014. Space Efficient Formats for Structure of Sparse Matrices Based on Tree Structures (I. Šimeček, Daniel Langr, Pavel...
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C++, Matlab and Python library for Hidden-state Conditional Random Fields. Implements 3 algorithms: LDCRF, HCRF and CRF. For Windows and Linux, 32- and 64-bits. Optimized for multi-threading. Works with sparse or dense input features.
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Genetic Programming in OpenCL is a parallel implementation of genetic programming targeted at heterogeneous devices, such as CPU and GPU. It is written in OpenCL, an open standard for portable parallel programming across many computing platforms.
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CUSHAW2: Parallel Gapped Read Alignment
One of the leading short-/long-read aligner to large genomes
CUSHAW2 is a fast and parallel gapped read alignment to large genomes, such as the human genome. The performance evaluation, by aligning simulated and real datasets to the human genome, shows that CUSHAW2 is consistently among the highest-ranked aligners in terms of alignment quality for both single-end and paired-end alignment, while demonstrating highly competitive speed. Furthermore, our aligner shows good parallel scalability with respect to the number of CPU threads. -
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DRAMMS
A Deformable Medical Image Registration Toolbox
...Some typical applications of DRAMMS include, -- Cross-subject registration of the same organ (can be brain, breast, cardiac, etc); -- Mono- and Multi-modality registration (MRI, CT, histology); -- Longitudinal registration (pediatric brain growth, cancer development, mouse brain development, etc); -- Registration under missing correspondences (e.g., vascular lesions, tumors, histological cuts). DRAMMS runs in command line in UNIX/Mac OS, It accepts Nifti/ANALYZE/MetaImage image formats. It is fully-automatic --- takes two input images, and generates a registered image and (optionally) the deformation field. More information (installation, tutorial, manual, demonstration, FAQ, etc) can be found at http://www.rad.upenn.edu/sbia/software/dramms/ . -
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BudgetedSVM
BudgetedSVM: A C++ Toolbox for Large-scale, Non-linear Classification
...BudgetedSVM trains models with accuracy comparable to LibSVM in time comparable to LibLinear, as it allows solving highly non-linear classi fication problems with millions of high-dimensional examples within minutes on a regular personal computer. We provide command-line and Matlab interfaces to BudgetedSVM, efficient API for handling large-scale, high-dimensional data sets, as well as detailed documentation to help developers use and further extend the toolbox. -
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A light-weight Regular Expression (regex) C library, using double-recursion. (command prompt tester included)
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Graphal
Graph algorithms interpreter, IDE, debugger, 3D visualizations.
Graphal is an interpreter of a programming language that is mainly oriented to graph algorithms. There is a command line interpreter and a graphical integrated development environment. The IDE contains text editor for programmers, compilation and script output, advanced debugger and visualization window. The progress of the interpreted and debugged graph algorithm can be displayed in 3D scene. -
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drvq
dimensionality-recursive vector quantization
drvq is a C++ library implementation of dimensionality-recursive vector quantization, a fast vector quantization method in high-dimensional Euclidean spaces under arbitrary data distributions. It is an approximation of k-means that is practically constant in data size and applies to arbitrarily high dimensions but can only scale to a few thousands of centroids. As a by-product of training, a tree structure performs either exact or approximate quantization on trained centroids, the latter... -
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PPSeq: Parallel NGS Analysis
Parallel Processing for Next-Generation Sequencing (NGS) Analysis
High-throughput next generation sequencing (NGS) technology has quickly emerged as a powerful tool in many aspects of biomedical research. However, along with its rapid development, the data magnitude and analysis complexity for NGS far exceed the capacity and capability of traditional small-scale computing facilities, such as multithreading algorithms on standalone workstations. To address this issue, here we present a solution using the ever-increasing supply of processing power by massive... -
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gridrpcdm
Library implementing the GridRPC and GridRPC DM OGF stantards.
...It is completely modular and already supports middleware modules for DIET and Ninf, as well as data manager modules for iRods, OwnCloud, rsync, scp. The installation is made easy with cmake and testing examples can be launched in a one line command. -
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libfgen
Library for optimization using a genetic algorithm or particle swarms
libfgen is a library that implements an efficient and customizable genetic algorithm (GA). It also provides particle swarm optimization (PSO) functionality and an interface for real-valued function minimization or model fitting. It is written in C, but can also be compiled with a C++ compiler. Both Linux and Windows are supported. -
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tway
moved to https://github.com/sroycode/tway
Currently two way astar is implemented. For those interested I have uploaded a patch of this for pgrouting v1.05 moved to https://github.com/sroycode/tway -
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Easiest Calendar Creator
Displays any calendar starting with 1760... at no cost!
This application can create any year calendar after the year 1759. Special feature: => Calendar creation in mass. -
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Numerical Systems Calculator
An arithmetic calculator for the most popular numerical systems.
Have you ever imagined not having to do math to convert the various number systems and still make arithmetic calculations with different numerical systems in the same expression? That's what makes this application. You can mix decimal, binary, octal and hexadecimal arithmetic operations using the symbols "+, -, *, /,^,". You can put "e" to use Napier's constant, put "pi" to use pi constant and put a "!" in the of numerical system form to factorization. So let's start doing the math in an... -
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User AES-128 bit encryption in counter mode of operation. supports interactive mode of operation and command line mode of operation.
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A Library to calculate smooth lines in 2D and 3D. Given some polyline, a finer segmented polyline is generated. The smoothed line may hit the original points or its length may be equal to the original length. Linear equations solvers are also provided.
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Evolving Objects
This project have been merged within Paradiseo.
See the new project page: https://nojhan.github.io/paradiseo/ (Archived project page: http://eodev.sourceforge.net/) -
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Water Retention on Magic Squares Solver
Water Retention on Magic Squares with Constraint-Based Local Search
A Constraint-Based Local Search solver for the Water Retention on Magic Squares-problem. The problem is a very hard combinatorial optimisation problem, invented by Craig Knecht. More can be read about it at: http://en.wikipedia.org/wiki/Water_retention_on_mathematical_surfaces Craig's website for the problem: http://www.knechtmagicsquare.paulscomputing.com/ The solver is mainly based on the theory and ideas from my bachelor thesis, which I wrote at Uppsala University, Sweden, for...
