Showing 10 open source projects for "tpp"

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  • 1
    The Sashimi project hosts the Trans-Proteomic Pipeline (TPP), a mature suite of tools for mass-spec (MS, MS/MS) based proteomics: statistical validation, quantitation, visualization, and converters from raw MS data to the open mzML/mzXML formats.
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    Downloads: 58 This Week
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  • 2
    Central Proteomics Facilities Pipeline

    Central Proteomics Facilities Pipeline

    A data analysis pipeline for shotgun mass-spectrometry proteomics.

    .... * As of 2019, limited maintenance is being carried out by myself (now in the BioHPC high performance computing group at UTSW), to allow CPFP to install and run on RHEL 7 / CentOS 7, with updated TPP 5.1.0 and search tools. This updated code can be found in the utsw-biohpc branch of the git repository, and may become a 2.2.0 release if time and testing allows. -- David Trudgian - 2019/01/03
    Downloads: 0 This Week
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  • 3

    TPP

    TinyPreProcessor

    A tiny c/c++ preprocessor Library designed as a base interface for higher-level scripting languages It implements everything from the C11 Standard. TPP is written in c, but offers a c++ api for convenience. TPP Is able, to generate 25MB of preprocessed code in 8 seconds Supported compiler extensions are: - __COUNTER__ - __has_include - __BASE_FILE__ - __INCLUDE_LEVEL__ - Multi-char constants - #pragma once - #include_next - #warning - Oh who am I kidding; this supports...
    Downloads: 0 This Week
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  • 4
    tpp_compiler
    A compiler for tpp language developed for the discipline of compilers of the federal technological university of Paraná in 2016/1
    Downloads: 0 This Week
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  • 5

    HPC Challenge

    HPC Challenge is an HPC benchmark for memory access patterns

    HPC Challenge benchmark consists of 7 tests: (1) HPL - the Linpack TPP benchmark which measures the floating point rate of execution for solving a linear system of equations. (2) DGEMM - measures the floating point rate of execution of double precision real matrix-matrix multiplication. (3) STREAM - a simple synthetic benchmark program that measures sustainable memory bandwidth (in GB/s) and the corresponding computation rate for simple vector kernel. (4) PTRANS (parallel matrix transpose...
    Downloads: 0 This Week
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  • 6
    Abacus
    A tool for extracting and preprocessing spectral count data for label-free quantitative proteomic analysis. This program is designed to be used with the Trans-Proteomic Pipeline (TPP).
    Downloads: 2 This Week
    Last Update:
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  • 7

    luciphor

    Calculates phospho-site localizations

    Luciphor is a program that performs phospho-site localization on MS/MS data processed by the Trans-Proteomic Pipeline (TPP). It is the first phospho-site prediction program to provide estimates for the false localization rate (FLR). The program is multithreaded and written in C++ for linux.
    Downloads: 0 This Week
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  • 8

    TPP News

    My project

    I make Youtube videos and twitch.tv livestreams showing games, the community, and much more.
    Downloads: 0 This Week
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  • 9
    This program parses data out of the interact*.xml files generated by the Trans-Proteomic Pipeline (TPP). It reads in a folder of such files and either makes a tab-delimited file or loads the data into a MySQL database.
    Downloads: 0 This Week
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  • 10
    This game is very similar to previous productions like Croc - so it is a 3D TPP Adventure game. Its main goal is to create great gameplay and use all advanced technology that provide new video cards.
    Downloads: 0 This Week
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