Motif released as open source software under LGPL v2.1
Motif is a freely available source code distribution for the Motif user interface component toolkit. Motif 2.3.8 is an updated version of Open Motif 2.3 and is a major bug fix release. Please submit any bugs to http://bugs.motifzone.com For support and general help, please visit the ICS MotifZone: http://motif.ics.com
Motif with new non-virtual panner (motif 2.0-2.2)
Motif , motif 2.0-2.2 Panner support is back, optional, non-virtual! GNU/configure now builds easy Imake is back too, and builds Quality Assurance Tests QUATS. for Files and full sf page, SEE: http://sourceforge.net/p/motif250/ (this page is here as 'Motif' not 'motif' because sourceforge search uses case sensitive hit ordering)
Cis-element prediction tool from microarray data
We developed a novel clustering-free method, microarray-associated motif analyzer (MAMA), to predict novel cis-acting elements based on weighted sequence similarities and gene expression profiles in microarray analyses. Simulation of gene expression was performed using a support vector machine and based on the presence of predicted motifs and motif pairs. The accuracy of simulated gene expression was used to evaluate the quality of prediction and to optimize the parameters used in this method...
Mutiara is a border motif designer with an interesting twist. Even non-artists can easily design pleasing motifs.
IUP is a portable toolkit for building graphical user interfaces. It offers a configuration API in three basic languages: C, Lua and LED. IUP purpose is to allow a program to be executed in different systems without any modification.
A fast, compact Motif/X11 plain text editor, for most popular Unix systems. Features significant support for programmers including syntax highlighting, macro language, and streamlined keyboard navigation. Mature and stable.
The Common Desktop Environment, the classic UNIX desktop
The Common Desktop Environment was created by a collaboration of Sun, HP, IBM, DEC, SCO, Fujitsu and Hitachi. Used on a selection of commercial UNIXs, it is now available as open-source software for the first time. For support, see: https://sourceforge.net/p/cdesktopenv/wiki/Home/
xps dynamically displays in an X Window the Unix processes as a tree or forest, the roots on the left and the leaf processes (with no children) on the right. The status of each process running, sleeping, stopped, etc.) can be indicated by a color. Di
A friendship bracelet pattern designer.
Bracelet Generator is a friendship bracelet pattern designer. It enables you to easily design your own patterns, add rows and strings, change the colors. The pattern can also be symmetrized. With the two-colored motif editor, create your motif and the pattern will automatically be generated. The motif can be rotated and symmetrized. The patterns can be exported in .png, .jpeg and .ps.
Motif based graphical Hex-dump of files. Includes searching for masked pattern, jump to file position and editing the file-contents. Display is "as is", without any endianess conversion. The file is displayed with address, Hex and text.
Multiplatform Ham Radio APRS and Mapping Program
NOTE: Code commits are FROZEN on SourceForge: New code is now at <http://github.com/Xastir/Xastir>. Real-time tracking & messaging of stations via radio/internet APRS data streams, w/125 map formats supported. Linux/FreeBSD/Solaris/MacOSX/Windows in any of 7 languages. Can also be used for mobile mapping w/GPS. MAILING LISTS ARE AT: PROJECT->WEB SITE.
Snd is a sound editor
Snd is a sound editor.
A Free Experimental System for Image Processing
ImLab is a free open source graphical application for Scientific Image Processing that runs in Windows, Linux and many other UNIX systems. It supports multiple windows, data types including 32 bit integers, 32 bit real numbers and complex numbers.
A portable file rename tool
A file rename tool can rename, lowcase, upcase large numbers of files. It's a quick and powerful tool written in C with extended regular expression supporting for searching and substituting pattern strings in filenames. Support Linux and Windows.
ViewKlass is a C++ framework for developing Motif applications with particular emphasis on enabling creation of reusable components. It is a clone of SGI's ViewKit(tm) library. It is derived from the Hungry Programmers (http://www.hungry.com) ViewKi
General data-reduction tool for fiber-fed integral-field spectrographs
p3d is a general data-reduction tool for use with fiber-fed integral-field spectrographs (IFSs); although, the spectrum viewer works with spectrum data cubes of any origin. The tool is built about the proprietary software IDL (Harris/EXELIS; see http://www.harrisgeospatial.com), but can be used without any license. Most slowly running loops are implemented in parallelized C (OpenMP).
A Web-based genome-wide Position Weight Matrix (PWM) Scanner
PWMScan is used to scan a position weight matrix (PWM) against a genome or, in general, a large set of DNA sequences. The PWM is the most commonly used mathematical model to describe the DNA binding specificity of a transcription factor (TF). A PWM contains scores for each base at each position of the binding site. The TF binding score for a given k-mer sequence is then obtained by simply adding up the base-specific scores at respective positions of the binding site. PWMScan takes as input...
Easymotif is a WYSIWYG GUI-builder for Motif, producing standard C-source code. It gives a possibility for graphic lay-out, creating all callbacks and functions. Each Motif-dialog will be displayed on screen as it will appear lateron when running the com
A CRISPR tool for user-defined protospacer adjacent motif
CRISPR/Cas system undoubtedly holds great potential for genome editing. Target site cleavage by CRISPR technology requires a protospacer adjacent motif (PAM) immediately downstream or upstream of the protospacer element to which the sgRNA binds. However, Cas9 from different types of bacteria or variant recognizes different PAM sequences. To meet the needs of different CRISPR system with specific and efficient sgRNA design, CRISPR-offinder was developed. Given an input FASTA file of the target...
CircularLogo is a light-weighted, easy to use web application that visualizes the intra-motif dependencies of a DNA or RNA motif.
Motif with new non-virtual panner (motif 2.0-2.2)
Motif , motif 2.0-2.2 Panner support is back and optional ! GNU/configure now builds easy Imake is back too, Everything builds Quality Assurance Tests QUATS Panner is NON-VIRTUAL and has new features from 2.1 (mwm deleted virtual panner in motif 2.1+). A panner slides the visible desktop to make it a vitrually huge desktop. NEW: pan with keys (without a panner) NEW: panner can drag windows NEW: edge panning (panner can see desktops on remote computers, Motif can show/use screens from...
Scanner of cis-regulatory elements in Arabidopsis genome
The major mechanism driving cellular differentiation and organism development is the regulation of gene expression. Cis-acting en-hancers and silencers appear to have key roles in regulating gene expression. Arabidopsis Motif Scanner was design to build gene networks by identifying the cis-regulatory elements position in the model plant Arabidopsis thaliana and by providing an easy interface to evaluate gene relations.
3D Graphics by a Lightweight Open-Source Software
GLOSS is a lightweight 3D Modeler / animator / render for GNU/Linux or Windows platforms. GLOSS is programmed in C/GTK3.
Garnet Common Lisp GUI Library
Garnet is a Graphical Toolkit for Lisp, which offers many advanced features. It was originally developed by Carnegie Mellon's User Interface Software Group and is one of the most feature rich interface toolkits available for lisp. The project has been dormant but some of us are trying to update it. To get the latest stable code, use the subversion repository: svn checkout svn://svn.code.sf.net/p/garnetlisp/svn/trunk garnetlisp-svn
A framework for solving partial differential equations
Overture is a framework for solving partial differential equations (PDEs) in complex, possibly moving geometry. Overture uses overlapping grids to represent the geometry. The software includes grid generation capabilities, PDE solvers for fluids, solids, and fluid-structure interactions (FSI) as well as electromagnetics.