Search Results for "motif"

We developed a novel clustering-free method, microarray-associated motif analyzer (MAMA), to predict novel cis-acting elements based on weighted sequence similarities and gene expression profiles in microarray analyses. Simulation of gene expression was performed using a support vector machine and based on the presence of predicted motifs and motif pairs. The accuracy of simulated gene expression was used to evaluate the quality of prediction and to optimize the parameters used in this method. ...

Bracelet Generator is a friendship bracelet pattern designer. It enables you to easily design your own patterns, add rows and strings, change the colors. The pattern can also be symmetrized. With the two-colored motif editor, create your motif and the pattern will automatically be generated. The motif can be rotated and symmetrized. The patterns can be exported in .png, .jpeg and .ps.

CircularLogo is a light-weighted, easy to use web application that visualizes the intra-motif dependencies of a DNA or RNA motif.

...IMPACT utilizes multi-reads in calling peaks and provides users with high-confidence peaks. In addition, IMPACT provides a completely integrated pipeline which produces downstream analysis results such as motif discovery and peak-to-gene annotation.

Basic Debian INTEL/AMD HPC console/desktop multi purpose. Linux for software devs/QA and thin laboratory clusters. MIC hardware, NUMA and live network memory and full IPv6 are supported. Final alpha release features: ======== * Usb image * General debian repos * VM optimizations * Hugepages by default * CGROUPs optimized by default * ALSA * Latest Debugging / Baremetal kernels * Full Haswell and MIC support in test * Full optimized python support * Full...

SLiMScape adds Short linear motif discovery tools to Cytoscape, transforming it into a SLiM discovery platform. A tutorial is available at the following URL: http://bioware.ucd.ie/slimscape/

Meteorologists use the FPA to create a series of weather charts, known as depictions, that show weather fields over a sequence of times. The weather fields can contain grid point data or sets of areas, lines or scattered points. The weather depictions are not just graphical displays, but windows into an object database. By connecting processes to the database, forecast offices can automatically generate forecast products or run local models, while spending more of their time on weather...

The X-Extensions for Python are a set of extension modules written in C and Python which provide access to various standard X libraries to Python programs. The X libraries that are thus made accessible include Xt, Xaw, Xm and more.

Maximal Clique Motif Reduction (MCMR) is a software program for running and then combining the output of multiple motif finder programs, such as MEME, AlignACE and Weeder, into a set of consensus predictions with associated confidence rankings.