Showing 63 open source projects for ".vcf file opener"

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  • 1
    DeepVariant

    DeepVariant

    DeepVariant is an analysis pipeline that uses a deep neural networks

    DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data. DeepVariant is a deep learning-based variant caller that takes aligned reads (in BAM or CRAM format), produces pileup image tensors from them, classifies each tensor using a convolutional neural network, and finally reports the results in a standard VCF or gVCF file. DeepTrio is a deep learning-based trio variant caller built on top of DeepVariant. DeepTrio...
    Downloads: 1 This Week
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  • 2
    nnn

    nnn

    The missing terminal file browser for X

    nnn is a fork of noice, a blazing-fast lightweight terminal file browser with easy keyboard shortcuts for navigation, opening files and running tasks. noice is developed considering terminal based systems. There is no config file and mime associations are hard-coded. However, the incredible user-friendliness and speed make it a perfect candidate for modern distros. nnn works with the desktop opener, adds new navigation options, navigate-as-you-type mode, enhanced DE integration, bookmarks...
    Downloads: 0 This Week
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  • 3
    vcard program vCardz_i

    vcard program vCardz_i

    VCF vcard, XML xcard, JSON jcard;View, Edit, Convert, Export, CSV, QR

    ... from your phone, tablet, iOS, other devices, as well as GMail, Outlook, Apowersoft Phone Manager, and others, in Windows® . Create, then email or post your vcard or QR to others. Supports vcard vcf 2.1, vcf 3.0, vcf 4.0, xcard 4.0, and jcard 4.0. Can run from a USB drive. Help file and example VCF, XML, and JSON files are provided too. vCardz_i version 2.8.2 list edit for tel & mail entries, bug fixes, 'Other' to 'More' tel, 64bit only 07/04/2024
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    Downloads: 46 This Week
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  • 4
    VCF-Virtual-Contact-File-Manager-in-JS
    A Simple VCF (Virtual Contact File) Viewer/Editor/Creator in JavaScript (VCF versions 2.1/3.0/4.0) What is a VCF file? A VCF file is a standard file format for storing contact information for one or more persons or a business. It typically includes a name, address, phone number, email address, and other contact information. VCF files also support custom fields, images, and other types of media. Live demo at: https://virtual-contact-file-manager.sourceforge.io/ Features: -Includes 13...
    Downloads: 5 This Week
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  • Cyber Risk Assessment and Management Platform Icon
    Cyber Risk Assessment and Management Platform

    ConnectWise Identify is a powerful cybersecurity risk assessment platform offering strategic cybersecurity assessments and recommendations.

    When it comes to cybersecurity, what your clients don’t know can really hurt them. And believe it or not, keep them safe starts with asking questions. With ConnectWise Identify Assessment, get access to risk assessment backed by the NIST Cybersecurity Framework to uncover risks across your client’s entire business, not just their networks. With a clearly defined, easy-to-read risk report in hand, you can start having meaningful security conversations that can get you on the path of keeping your clients protected from every angle. Choose from two assessment levels to cover every client’s need, from the Essentials to cover the basics to our Comprehensive Assessment to dive deeper to uncover additional risks. Our intuitive heat map shows you your client’s overall risk level and priority to address risks based on probability and financial impact. Each report includes remediation recommendations to help you create a revenue-generating action plan.
  • 5
    CliFM

    CliFM

    The command line file manager

    A file manager for the Unix terminal. Unlike most file managers out there, based on the TUI, CliFM is entirely based on command-line. It is also ultra-lightweight, lightning fast, extensible, and written in C.
    Downloads: 8 This Week
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  • 6

    Lung cancer screening panel

    Software for predicting probability of lung cancer from VCF file

    We have developed a lung cancer screening panel based on the occurrence of specific clonal hematopoietic mutations in peripheral blood samples. The software provided here can be used to predict the probability of cancer from peripheral blood samples. The sequencing data from the blood sample should be first aligned to the GRCh38 reference genome using the Burroughs-Wheeler aligner and variants called using the Mutect2 for variant calling. The resulting VCF file is used as input to the software...
    Downloads: 0 This Week
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  • 7
    crossmap

    crossmap

    convert genome coordinates betweeen assemblies

    CrossMap is a program for convenient conversion of genome coordinates and genomeannotation files between assemblies (eg. lift from GRCh36/hg18 to GRCh37/hg19 or vice versa).It support file in BAM, SAM, BED, Wiggle, BigWig, GFF, GTF format.
    Downloads: 6 This Week
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  • 8
    123VCF

    123VCF

    An Intuitive and Efficient Tool for VCF file filtration

    123VCF has been developed to make the filtration step of VCF files efficient and more importantly easy to understand. It can be used in the most important step of whole exome/genome sequencing data analysis in the research and also clinical settings. User manual: https://dl.adbioinformatics.net/123VCF/123VCF_Manual.ver2.pdf If you use 123VCF, please cite its paper: Eidi, M., Abdolalizadeh, S., Moeini, S. et al. 123VCF: an intuitive and efficient tool for filtering VCF files. BMC...
    Downloads: 0 This Week
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  • 9
    SPiCEv2.1

    SPiCEv2.1

    Splicing Prediction in Consensus Element

    SPiCE is no longer maintained. To access the tool's predictions, please use SPiP, accessible at : https://sourceforge.net/projects/splicing-prediction-pipeline/ or https://github.com/raphaelleman/SPiP If you have questions, please contact me to: r.leman@baclesse.unicancer.fr or raphael.leman@orange.fr v2.1.5 (05/2019) + corr (01/2020): Fix bug for linux version v2.1.4 (03/2019): Proxy management (only for Windows version) v2.1.3 (07/2018): correction bug for first 3' ss import vcf file...
    Downloads: 0 This Week
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  • Pimberly PIM - the leading enterprise Product Information Management platform. Icon
    Pimberly PIM - the leading enterprise Product Information Management platform.

    Pimberly enables businesses to create amazing online experiences with richer, differentiated product descriptions.

    Drive amazing product experiences with quality product data.
  • 10
    Freeter

    Freeter

    The smartest way to work on your computer

    ... of switching between accounts, the widget also enables you to stay signed-in with different accounts on per-project, per-workflow or per-widget basis. Use the file opener widget to open all project files and folders in your editing programs with a single click. Use the web query widget to quickly perform templated queries with a web search engine or any other website. Stop keeping checklists and to-do lists in your head. Let the to-do list widget remember them for you. And more...
    Downloads: 0 This Week
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  • 11
    vcparse

    vcparse

    A simplistic C++ VCF/VCARD parser

    This single-file project transcodes VCF/VCARD files into JSON for easy filtering with grep. VCARD support is incomplete but can be extended. This project was motivated from recovering contacts backed up from an Android phone in a human-readable yet machine-friendly format.
    Downloads: 1 This Week
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  • 12

    Free VCF file to CSV or Excel converter

    Excel VBA Script to convert VCF file with multiple entries to CSV file

    This is an Excel based VBA script used to import bulk .VCF files that contain more than 1 Vcard and then convert them to a comma separated .CSV file or Excel xls file that can then be imported into Outlook, Google, or any other application that supports import of contacts using CSV files. This has been written to support VCF 2.0, 2.1, 3.0 and 4.0 formatted files including those with printable encoding (MIME) and has been tested with bulk VCF files from Backupify, Google Contacts (Gmail...
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    Downloads: 107 This Week
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  • 13

    filterSAMbyVCF

    his program extracts reads from SAM file according to SNPs from a VCF

    filterSAMbyVCF is a Pascal command line program to separate allele-specific reads from a SAM file. This program extracts reads from SAM file according to SNPs from VCF file. Extracted reads have ALT allele at the position given in VCF file. Usage with UNIX/Linux/MacOS: ./filterSAMbyVCF vcfFile.vcf samFile.sam Usage with Windows: filterSAMbyVCF.exe vcfFile.vcf samFile.sam No warranty of any kind is provided. Use at your own risk.
    Downloads: 0 This Week
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  • 14
    VCF5

    VCF5

    Federated Open Micro-formatting Project

    Variant Calling File format version 5.0 this project consists of the *.vcf file format resources as well as definitions files and control files... This project allows for more than one contributor to change and modify data in appurtenance too the run-time and operations of the VCF version 5 file format.
    Downloads: 0 This Week
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  • 15

    akcansoft XLS-to-VCF

    This Excel file exports contact information from a table to a vcf file

    Downloads: 1 This Week
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  • 16

    variantkey

    Binary files for variantkey

    Binary files for the variantkey library: https://github.com/Genomicsplc/variantkey The binary files are generated using the script: https://github.com/Genomicsplc/variantkey/blob/master/resources/tools/vkhexbin.sh from the Human Variation Sets in VCF Format [National Library of Medicine (NLM)]: ftp://ftp.ncbi.nih.gov/snp/organisms/
    Downloads: 0 This Week
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  • 17
    vCard-Reader-viewer

    vCard-Reader-viewer

    Makes vCard (.vcf) data readable

    Makes vCard (.vcf) data readable Full security nothing is uploaded, everything just plays out their computer with the language JavaScript. Just download and double click on 'vCard-to-CSV.html' file! Tested with a contacts.vcf file from my Android Samsung smartphone. Runs on almost every device! Download: https://sourceforge.net/projects/vcard-reader-viewer/files/vCard-Reader.html/download When the message: Software download arent't possible on this device. Then click klick bottom the small...
    Downloads: 0 This Week
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  • 18
    Walnut

    Walnut

    Open Advent Axys files without running Axys32.exe

    ** v2018.01.01 ** is here! Read about the improvements in the release notes in the Files section. Please report any issues to info@opulos.com Thanks! Walnut is for financial firms that want to open an alternative way to open files created in Advent Axys. Opulos offers a commercial product called NuWorkflow which loads Axys files into a SQL database. It also improves business operations for financial firms via automation and quality assurance checking. If you like Walnut then you will love...
    Downloads: 0 This Week
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  • 19
    vCard-to-CSV

    vCard-to-CSV

    Makes vCard (.vcf) data readable

    Makes vCard (.vcf) data readable Full security nothing is uploaded, everything just plays out their computer with the language JavaScript. Just download and double click on 'vCard-to-CSV.html' file! Tested with a contacts.vcf file from my Android Samsung smartphone. Runs on almost every device! Download: https://sourceforge.net/projects/vcard-to-csv/files/vCard-to-CSV.html/download - When it is helpful, please rate this project. - Newest version is 2.1 from 1. November...
    Downloads: 2 This Week
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  • 20

    csv2vcf converter

    csv(Comma-Separated Values) to vCard 2.1 converter

    This software will help you to convert a .csv(Comma-Separated Values) files to .vcf(vCard 2.1) files. For example, you'll find it very helpful for transfering your contacts from old-types cell phones, wich can export it's phonebook to csv only, to newer ones or even smartphones, etc. The latest version from now on has the ability of language selection. The built in languages are: English, Ukrainian and Russian. Besides, users can even make own translations now and store them into languages.ini...
    Downloads: 9 This Week
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  • 21
    fcGENE: Genotype  format converter

    fcGENE: Genotype format converter

    Format converting tool for genotype Data (e.g.PLINK-MACH,MACH-PLINK)

    Main application is twofold: first to convert genotype SNP data into formats of different imputation tools like PLINK MACH, IMPUTE, BEAGLE and BIMBBAM, second to transform imputed data into different file formats like PLINK, HAPLOVIEW, EIGENSOFT and SNPTEST. Readable file formats: plink-pedigree (ped and map), plink-raw, plink-dosage, mach , minimac, impute, snptest, beagle and bimbam. Similarly all kinds of imputation of outputs are also accepted. Formats which can be generated by fcGENE...
    Downloads: 1 This Week
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  • 22
    VCF Reader

    VCF Reader

    A tool that enables users select and view contact details from a vCard

    A tool that enables users select and view contact details from a vCard (.vcf) format. It also has search functionality and remembers your last viewed file.
    Downloads: 0 This Week
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  • 23
    Multi File Opener

    Multi File Opener

    Easly open multiple files like programs, pictures and links!

    Downloads: 0 This Week
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  • 24

    QSdpR

    Viral Quasispecies Reconstruction software based on QSdpR algorithm

    This is a viral quasispecies reconstruction software for quasispecies assembly problem on mRNA viruses, which is based on a correlation clustering approach and uses semidefinite optimization framework. The software accepts a reference genome, a NGS read set aligned to this reference and set of SNP locations in the form of a vcf file and outputs an optimal set of reconstructed species genomes which describes the underlying viral population.
    Downloads: 2 This Week
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  • 25

    VCF Split

    Vcard File Splitter

    This little Java Program splits a VCF file consisting of multiple vcarss into single files. This is particualry useful if you want to import a vcf into Microsoft Outlook. It ist a executable jar file, so starting it with java -jar vcfsplitter.jar or double clicking it in a gui should work fine. You can also specify evertyhing by command line as follows: java -jar vcfsplitter.jar <infile> <outdir> For the source click on the website link..
    Downloads: 1 This Week
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