Search Results for "genetic" - Page 8
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Showing 707 open source projects for "genetic"
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Extensions for the R statistical analysis system providing data types and functions for the storage, annotation, visualization, and statistical analysis of genetic data.
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Mobile Device as GUI for Smart Objects
Mobile Device as GUI for Smart Objects
UNDERGRADUATE PROJECT UNDER DEVELOPMENT -- INSTABLE VERSION Android application that acts as GUI for embedded devices without user interface that are smart objects in a grid -
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VarImpact
Extracting effects of mutations on molecular properties from text.
Genetic variants alter cellular behavior in a variety of ways, changing biochemical properties of DNA, mRNA, and proteins. Many large-scale sequencing projects are under way to detect human variation in health and disease. Although broad disease associations can be discovered by GWAS studies, the low-level impact of mutations is hardly available in structured form. The results of thousands of small-scale experiments, on the other hand, are present in the literature and discuss observations made... -
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Athus
Manage, merge, filter and convert population genetics data
This project assists you in performing population genetic analyses by taking over the ugly, boring and error-prone data manipulation steps. Starting from well specified input formats VCF, BED and FASTA and a unique configuration file describing data (f.e. from SNP-arrays or sequencing) as well as filtering one can create standard POPGEN formats like Eigenstrat, PEDMAP (PLINK), Treemix ... In addition there are several utilities for * generating VCF from SNPArray data (NCBI - GEO, Illumina... -
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dnarand
dnarand is a highly customizable DNA sequences writer
... to tell dnarand which is our favorite GC ratio, so that it can simulate AT-rich or GC-rich genomes, and choose our favorite genetic code from all available Ncbi's ones. I'm actively adding new features. -
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PrivLocal/PrivGene
Differentially Private Model Fitting Using Genetic Algorithms
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JCLEC is a general purpose evolutionary computation framework developed in Java. Some of its mains features are: multilevel architecture, highly reusable and integrable with other systems, easy to use and a lot of implemented algorithms and operation
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SimpleFB_GA
a simple genetic algorithm written in FreeBasic
a FreeBasic-written Genetic Algorithm code is here deployed -
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yougenmap
Your place to load, share, and compare genome maps
YouGenMap is a genetic map viewer that allows users to upload, display, download, update, search, share, and compare sets of mapping and marker annotation data. You can submit and process your map-set data either as private data or make them public accessible. -
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HfT GA RCPSP
Genetic Algorithm for the RCPSP
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NEAT Visualizer SFML
A NEAT Implementation and Visualization System
Evolves neural networks using the Neuro-Evolution of Augmenting Topologies (NEAT) technique. A separate visualization system uses another genetic algorithm to evolve images of the otherwise dimensionless networks so their structure can be observed. -
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EASEA (EAsy Specification of Evolutionary Algorithms: pronounce "easy") is a high-level language dedicated to the specification of evolutionary algorithms. EASEA up to version 0.7 compiles .ez specification files into C++ or JAVA object files.
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Modular Single-set Enrichment Test
A randomization testing script for genetic enrichment analysis
The Modular Single-set Enrichment Test (MSET) is a randomization testing script written in R that allows the user to statistically assess overrepresentation of any gene list of interest within a list of significant gene results from an expression study. MSET uses a tcltk graphical user interface and is optimized for use in Windows operating systems. It also works in OS X, but requires the installation of the XQuartz architecture (https://xquartz.macosforge.org/trac/wiki) to enable tcltk.... -
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Genetic data converter
Convert genetic data for hapmixmap software
Genetic data converter, for hapmap.org and hapmixmap data formats. Reads data in tabular format and writes in hapmixmap format. It's possible to add extensions to output different data formats. -
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SEO & SEM - Marketing Text Writer
Open Source SEO & SEM Text Creation Tools for free Article Writer
Open Source Tool for Search Engine Optimization (SEO & SEM) used for automatic content processing. These SEO Content Genrators and Article Writers based on Text... -
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coalescent
Software tool for Research in Computational Population Genetics
Development of exact and approximate methods (Importance Sampling and MCMC based) for computing likelihoods under the standard population genetic models of mutation,migration & recombination. Project issues are mainatined at https://freecode4susant.atlassian.net/browse/COALESCENT -
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VariantMaster
Extract causative variants for monogenic and sporadic genetic diseases
There is a fast growing interest in clinical genetics to the utilization of High Throughput Sequencing data for accurate diagnosis of monogenic diseases. To improve the identification of the variants from HTS, we developed VariantMaster, an original program that accurately and efficiently extracts causative variants in familial and sporadic genetic diseases. The algorithm takes into account predicted variants (SNPs and indels) in affected individuals or tumor samples and utilizes the row (BAM... -
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An optimized java library for genetic algorithms. The library is designed to be fast and memory light, but still very easy to use.
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Genetic optimizing of functions with two variables. Program allows to type functions dynamically using Reverse Polish Notation. All allowed symbols are: x,y - for variables; ( ) ^ * + - , 0 1 2 3 4 5 6 7 8 9.
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BlueBox A-Life
BlueBox is an alife open source game.
BlueBox is an artificial life (alife) open source game. The goal is to raise a creature that is able to learn and evolve genetically. This project is inspired by the work of the game "Creatures" by Steve Grand. -
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niGA
Heterogenous Multiprocessor Scheduling Using Genetic Algorithms
Implementation of task scheduling using Genetics algorithm for heterogeneous parallel programming -
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sgena
sgena is a framwork for modelling genetic algorithms written in scala
sgena is supposed to be: - Easy to understand - Easy to use - Flexible - Generally usable - Extensable -
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OBSOLETE s-ga
genetic algorithm
Obsolete. Moved to the new Project 'sgena' -
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ABM-Calibration-SensitivityAnalysis
Codes and Data for Calibration and Sensitivity Analysis of ABM
... fitting: 1. Full Factorial Design 2. Simple Random Sampling 3. Latin Hypercube Sampling 4. Quasi-Newton Method 5. Simulated Annealing 6. Genetic Algorithm 7. Approximate Bayesian Computation b. Sensitivity Analysis: 1. Local SA 2. Morris Screening 3. DoE 4. Partial (Rank) Correlation Coefficient 5. Standardised (Rank) Regression Coefficient 6. Sobol' 7. eFAST 8. FANOVA Decomposition Have also a look on our other projects: http://www.uni-goettingen.de/de/315075.html