Showing 23 open source projects for "genetic"

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  • 1
    Mendel’s Accountant
    Mendel’s Accountant is a biologically realistic, forward-time, parallel, numerical simulation program which models genetic change within a population, as affected by mutation and selection.
    Downloads: 0 This Week
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  • 2

    BIGSdb

    Software for storing and analysing bacterial sequence data

    The Bacterial Isolate Genome Sequence Database (BIGSdb) is a scalable, web-accessible database system designed to store and analyse linked phenotypic and genotypic information in a computationally efficient manner. Sequence data can range from single sequence reads to multiple contigs generated by whole genome sequencing technologies. The system incorporates the capacity to define and identify any number of loci and genetic variants at those loci within the stored nucleotide sequences...
    Downloads: 0 This Week
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  • 3

    scalpel

    Genetic variants discovery tool

    Bioinformatics pipeline for discovery of genetic variants from NGS reads.
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    Downloads: 10 This Week
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  • 4
    MicroGP

    MicroGP

    A multi-purpose extensible self-adaptive evolutionary algorithm

    MicroGP (µGP, ugp) is a versatile optimizer able to outperform both human experts and conventional heuristics in finding the optimal solution of hard problems. It is an evolutionary algorithm since it mimics some principles of the Neo-Darwinian paradigm. ⚠️ A new version is available on https://github.com/squillero/microgp4
    Downloads: 0 This Week
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  • 5
    AAARF, written in PERL and with numerous adjustable parameters, identifies sequence overlaps in small shotgun sequence datasets and walks them out to create long pseudomolecules representing the most abundant repeats in a genome.
    Downloads: 0 This Week
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  • 6
    vcftools
    A set of tools for working with VCF files, such as those generated by the 1000 Genomes Project. This project is migrating to github: https://vcftools.github.io/
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    Downloads: 260 This Week
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  • 7
    PRIMUS

    PRIMUS

    Pedigree Reconstruction and Identification of a Maximum Unrelated Set

    NEW: Download new version with Pedigree Reconstruction at primus.gs.washington.edu This versions is outdated and incomplete. Please visit the new website for the complete version of PRIMUS. We present a method adapted from graph theory that always identifies the maximum set of unrelated individuals in any dataset, and allows weighting parameters to be utilized in unrelated sample selection. PRIMUS reads in user-generated IBD estimates and outputs the maximum possible set of unrelated...
    Downloads: 0 This Week
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  • 8
    CViT
    CViT - Chromosome Viewing Tool. A collection of Perl scripts that enable quick visualizations of features on linkage groups, psuedochromosomes or cytogenetic maps. Intended for whole-genome views of data but can be used to create images of single chromosomes/linkage groups, contigs, or BACs, or even proteins -- any feature that has a location on a backbone. Handles most standard genetic/genomic coordinate systems. Reads GFF3 data and produces a PNG or SVG image.
    Downloads: 0 This Week
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  • 9
    SimpleMap

    SimpleMap

    A tool to streamline high density genetic linkage group constrcution

    Downloads: 1 This Week
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  • 10
    SEO & SEM - Marketing Text Writer

    SEO & SEM - Marketing Text Writer

    Open Source SEO & SEM Text Creation Tools for free Article Writer

    Open Source Tool for Search Engine Optimization (SEO & SEM) used for automatic content processing. These SEO Content Genrators and Article Writers based on Text...
    Downloads: 0 This Week
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  • 11
    The Generic Genetic Studies Database (GGSD) is a web-based, relational database driven data management software package for the management of large scale genetic studies.
    Downloads: 0 This Week
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  • 12
    SimBac is a software package for simulating bacterial genome evolution. It outputs samples of DNA sequences at each generation & allows testing of major evolutionary mechanisms, including mutation, recombination, genetic drift, and natural selection.
    Downloads: 0 This Week
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  • 13
    Assimilator is a molecular genetics tool to inform selection of associated genetic variants for functional studies
    Downloads: 1 This Week
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  • 14
    breve is a free, open-source 3D multi-agent simulation package designed for simulating decentralized systems and artificial life.
    Downloads: 0 This Week
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  • 15
    Generic System for Data Processing
    Downloads: 0 This Week
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  • 16
    VCAKE is a genetic sequence assembler capable of assembling millions of small nucleotide reads even in the presence of sequencing error. This software is currently geared towards de novo assembly of Illumina's Solexa Sequencing data.
    Downloads: 0 This Week
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  • 17
    Genetic programming environment to inference context free grammars base on positive and negative examples of language.
    Downloads: 0 This Week
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  • 18
    This package aims to enable complex ideogram drawing in genetic applications for different species.
    Downloads: 0 This Week
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  • 19
    Genetic analysis programs for affected sibling pair data and discrete traits, including multipoint exclusion mapping, map distance estimation, transmission disequilibrium testing, and relationship validation
    Downloads: 0 This Week
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  • 20
    The goal of the Rats and Mazes project is to build a simple genetic algorithm to find general solutions to random non-cyclic single path mazes. I believe that the solutions will tend towards either the right/left-hand rule.
    Downloads: 0 This Week
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  • 21
    The SP is a tool is a tool to research for automatic synthesis of protocols using genetic programming. This tool will allow the construction of heuristics to apply techniques simulation and validation of models.
    Downloads: 0 This Week
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  • 22

    biojazz

    In silico evolution of biochemical networks.

    In silico evolution of biochemical networks using a genetic algorithm combined with a rule-based biochemical network model.
    Downloads: 0 This Week
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  • 23
    A repository of grid computing student exercises. The repository currently contains a grid-enabled mergesort using Condor. Exercises to be developed include genome analysis, genetic algorithm, integration, matrix multiply, ray tracing, etc.
    Downloads: 0 This Week
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