Search Results for "genetic"
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Showing 70 open source projects for "genetic"
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pgapack, the parallel genetic algorithm library is a powerfull genetic algorithm library by D. Levine, Mathematics and Computer Science Division Argonne National Laboratory. The library is written in C. PGAPy wraps this library for use with Python.
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The ASCO project aims to bring circuit optimization capabilities to existing SPICE simulators using a high-performance parallel differential evolution (DE) optimization algorithm. It supports Eldo, HSPICE, LTspice, Spectre, and Qucs.
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fas2svg
Visualize genetic code structure from fasta file.
Generate svg file from fasta file. -
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This site hosts the source code for C++ version of the Broker for SBW, NOM module, advanced simulation suite, analysis applications and model editors.
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Chronological Cohesive Units
The experimental source code for the paper
The experimental source code for the paper, "A Novel Recommendation Approach Based on Chronological Cohesive Units in Content Consuming" -
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SFS_CODE (Selection on Finite Sites under COmplex Demographic Events) performs forward population genetic simulations under a general Wright-Fisher model with arbitrary demographic, selective, and mutational effects.
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ExAM-Exome_Analysis_And_Mining
A whole exome sequencing analysis package and its graphical interface
During the past few years, whole exome sequencing has imposed itself for genetic research, largely due to its use for detection of causative mutations responsible for Mendelian disorders. As a consequence of their power and of the rapidly decreasing cost of these technologies, massive amount of exome sequencing data are generated and becoming available to a broadening community of scientists. However, these data remain difficult to analyze and interpret by the general scientific community, due... -
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LDhat
Estimate Recombination Rates from Population Genetic Data
LDhat is a package written in the C language for the analysis of recombination rates from population genetic data. This package has migrated to github: https://github.com/auton1/LDhat -
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FMFilter
Fast Model Based Variant Filtering Tool
Filtering out the prominent portion through the excessive amount of information produced by next generation techniques is a challenging task. Current tools enable to analyze next generation sequencing data in various methods. However, there is still need for fast, easy to use and efficacious tools. We provide an efficient filtering tool for next generation sequencing data produced by genetic disease studies. FMFilter allows to choose one of the inheritance models (recessive, dominant, compound... -
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Navigation Shortest Map Dhaval Kadia
Shortest Path Navigator with Directions and Distance
Programmed on Language C. A nano-Infant of GOOGLE-MAP Optimized to Consume some MB instead of 50 GB of RAM This was Programmed Quarter Year ago in 2014 -
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RANGE: produce random genetic transcription networks in the NEMO language, which when compiled outputs models in Systems Biology Markup Language. Generate synthetic microarray data, or use NEMO alone to SBML-ize a network, or visualize it in cytoscape.
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outbreaker
outbreaker
A R package for disease outbreak reconstruction using epidemiological and genetic data. -
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NeuroSolutions: Formula Generator
Utility converts the weights file of a MLP Breadboard into a formula
The NeuroSolutions: Formula Generator utility converts the weights file of a default MLP breadboard (1-hidden layer with a TanhAxon in the hidden layer and either a TanhAxon or BiasAxon in the output layer) into a usable formula that can be copied and pasted into your own programs to compute the output of the trained neural network. -
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GENIE (GEne-geNe IntEraction)
GPU based Parallel Gene-Gene Interaction Analysis
Gene-gene interaction in genetic association studies is computationally intensive when a large number of SNPs are involved. Most of the latest Central Processing Units (CPUs) have multiple cores, whereas Graphics Processing Units (GPUs) also have hundreds of cores and have been recently used to implement faster scientific software. However, currently there are no genetic analysis software packages that allow users to fully utilize the computing power of these multi-core devices for genetic... -
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Framework for individual and population genome assembly and discovery of genetic variants from sequence reads.
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AIS is an Development Platform providing a high-speed JIT compiler for LISP and JavaScript, web server, object repositories, MySQL integration and libraries supporting a wide variety of advanced genetic programming and symbolic regression techniques.
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libfgen
Library for optimization using a genetic algorithm or particle swarms
libfgen is a library that implements an efficient and customizable genetic algorithm (GA). It also provides particle swarm optimization (PSO) functionality and an interface for real-valued function minimization or model fitting. It is written in C, but can also be compiled with a C++ compiler. Both Linux and Windows are supported. -
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GeneticFighters
An experiment with genetic algorithms and arena combat
Genetic algorithms using assembly-instructions as a stand-in for DNA train killbots in an arena. A dynasty of fighters bred for battle charge the field. The worthy take mates while the losers are cast into the void. But how do we judge a true warriors spirit? By the number notches on his sword? By his deftness of feet? Or possibly whether or not he even took a single bloody step last round, because sometimes that's all we can hope for. Agents are 255 bytes of 8-bit addressable codespace... -
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texgenpack
Texture compression and conversion program with KTX and DDS support.
texgenpack is a texture compression and conversion program featuring a command line utility and a simple GUI program . Compression is implemented using a genetic algorithm. It supports compression, decompression, conversion and comparison of texture and image files. The image format supported is PNG, while for textures there is support for KTX, PKM and DDS using ETC1, ETC2, DXT1/3/5 or BPTC (BC7) texture compression. Several uncompressed texture format are also supported. This program... -
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This utility, lingen, implements evolution of native machine code via linear genetic programming. The assembly level code uses a subset of assembly language which manipulates and performs calculations using the floating point unit (FPU) of the CPU.
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Bouc-Wen-Baber-Noori model of hysteresis
Compute parameters of the Bouc-Wen-Baber-Noori model of hysteresis
... the documentation and the following papers: - Kalyanmoy Deb, Sameer Agrawal, Amrit Pratap, T Meyarivan. "A Fast and Elitist multi-objective Genetic Algorithm: NSGA-II". Journal IEEE Transactions on Evolutionary Computation (IEEE-TEC). 2002. Vol. 6. No. 2. pp. 182-197. - Gilberto A. Ortiz, Diego A. Alvarez, Daniel Bedoya-Ruiz. "Identification of Bouc-Wen type models using multi-objective optimization algorithms". Computers & Structures. Vol. 114-115. pp. 121-132. 2013. -
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an simple thread pool in linux, based on POSIX thread API. Management thread will retrieve needless idle thread to keep in low resource consumption.
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OptLib
C nonlinear optimization library
[PROJECT MIGRATED TO GIT-HUB] OptLib is a library of nonlinear optimization routines focused on the use of stochastic methods, including Simulated Annealing, Genetic Algorithms, and Monte Carlo. Routines are parallelized using MPI. -
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