Search Results for "scientific plotting software" - Page 71
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Showing 5804 open source projects for "scientific plotting software"
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scipion-xmipp
Image processing framework to integrate EM software packages.
Scipion is an image processing framework to obtain 3D models of macromolecular complexes using Electron Microscopy (3DEM). It integrates several software packages and presents an unified interface for both biologists and developers. Scipion allows to execute workflows combining different software tools, while taking care of formats and conversions. Additionally, all steps are tracked and can be reproduced later on. Xmipp is a well-known package in the EM image processing. It is integrated... -
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Jupyter notebook snippets menu
Adds a customizable menu item to Jupyter (IPython) notebooks
Adds a customizable menu item to Jupyter notebooks to insert snippets, boilerplate, and examples of code. This notebook extension adds a menu item (or multiple menu items, if desired) after the Help menu in Jupyter notebooks. This new menu contains little snippets of code that we all forget from time to time but don't want to google, or are just too lazy to type, or simply didn't know about. It can also be helpful for people just starting out with a programming language, who need some ideas... -
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Maximum Common Genome Alignment (MCGA)
Pipeline for creating core genome alignments for phylogenetic analysis
Maximum Common Genome Alignment (MCGA) Tool MCGA is a bioinformatics analysis tool written in Python for generating core genome alignment for bacterial whole genome sequences which can be used to construct phylogenetic trees. -
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CUDAlign
CUDAlign is a tool that aligns huge DNA sequences in CUDA capable GPUs
CUDAlign is a tool able to align pairwise DNA sequences of unrestricted size in CUDA GPUs, using the Smith-Waterman algorithm combined with Myers-Miller. It produces the optimal alignment of 1 million base sequences in 45 seconds using a GTX 560 Ti. Many optimizations are being developed for this software. Look at the following papers for detailed information: [1] Edans Sandes, Alba Melo. Retrieving Smith-Waterman Alignments with Optimizations for Megabase Biological Sequences using GPU.... -
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Hunspell is a spell checker and morphological analyzer library and program designed for languages with rich morphology and complex compounding or character encoding. Hunspell interfaces: Curses, Ispell compatible pipe interface, OpenOffice.org UNO module
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FASTQSim
NGS data characterization and in silico read generation
FASTQSim is a tool that provides the dual functionality of Next-Gen Sequencing dataset characterization and metagenomic data generation. FASTQSim is sequencing platform-independent, and computes distributions of read length, quality scores, indel rates, single point mutation rates, indel size, and similar statistics for any sequencing platform. To create training or testing datasets, FASTQSim has the ability to convert target sequences into in silico reads with matching error... -
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The software simulates the motion of the solar system by different numerical methods. On start, the software expects the input file planeten.txt in the same folder. This file should contain the desired initial conditions. The separator may be adjusted via the file settings.ini.
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JyNV
Jupyter Notebook Frontend
Lean Webkit (QtWebKit) based Browser for Jupyter/IPython notebooks. -
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EpicsSharp
A client, server and gateway implementation for the EPICS protocol
A .NET implementation of a client, server and gateway for the EPICS protocol. Let you fully integrate your .NET software with other EPICS clients, or servers. -
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NexusDataLink
Connect, monitor and control your (embedded) systems remotely. m2m/IoT
Connect, monitor and control your systems or embedded devices remotely (m2m/IoT) - for example your Raspberry Pi. The communication interface is defined in XML automatically providing a REST interface. NexusDataLink integrates smoothly in existing software or firmware and significantly reduces connection- or communication-related source code. -
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vHDL Obfuscator GUI
vHDL Obfuscator is an small GUI to obfuscate and reformat HDL files
VHDL and Verilog HDL are standards languages for hardware description. Sometimes is necessary to share the source HDL file but maintaining a little level of control and protection of the intellectual property. This tool generate obfuscated code that is almost unreadable to humans, but is still readable to compilers and simulators. This tool use GHDL (https://sourceforge.net/projects/ghdl-updates/), HDLObf (https://sourceforge.net/projects/hdlobf/), Icarus Verilog... -
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RPi-Monitor
Real time monitoring : RPi-Monitor always keep an eye on your computer
RPi-Monitor is a monitoring tool which keep an eye on your computer and can give you the current status and the history of resources usages in a nice looking and interactive web interface. RPi-Monitor is design to be light and powerful and doesn't relies on other software to run. It has been deigned to run on embedded device and consume very few system resources. -
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ctsa
A Univariate Time Series Analysis package in ANSI C
CTSA is a C software package for univariate time series analysis. This is a work in progress. ARIMA and Seasonal ARIMA models have been added so far. Other functionality will be added soon . Documentation - https://github.com/rafat/ctsa/wiki -
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FreeSOLID is a library for collision detection of three-dimensional objects undergoing rigid motion and deformation. FreeSOLID is designed to be used in interactive 3D graphics applications.
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Alpha stable distributions for C++
C++ code to perform Alpha stable fit
This code is the translation into C++ of part of the Matlab code from Mark Veillette available at: http://www.mathworks.com/matlabcentral/fileexchange/37514-stbl--alpha-stable-distributions-for-matlab -
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PanelCheck is an easy-to-use software tool for visualization of sensory profiling data using different types of plots. The joint information from the implemented plots provide detailed insight into assessor and panel performance.
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ccwatcher
A computational chemistry monitoring, parsing and plotting application
ccwatcher monitors the progress of computational chemistry calculations during runtime. It has both a GUI and a "Command Line Interface" to which it parses important output and plots SCF energies. -
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The JINSECT toolkit is a Java-based toolkit and library that supports and demonstrates the use of n-gram graphs within Natural Language Processing applications, ranging from summarization and summary evaluation to text classification and indexing.
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OntoMetriCalc
A Java API for measuring OWL ontologies
OntoMetriCalc (Ontology Metrics Calculator) is a Java API for measuring OWL ontologies based on Jena. -
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Remote control DLP projector NEC in VBS
Remote Control DLP projector from NEC projector VTxx VBS script
VBS-script for a remote control the projector through the converter RS-485/RS-232 over RS-485 network with voice actions (on-off, volume control, navigation and exit). Since its own software projector does not involve the use of an RS-485 interface and the ability to control the direction of reception and transmission, the necessary converters as converters with auto control, suitable, for example, ovenovskie model AC3-M-024 (without their own address). If necessary, the networking of... -
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GESPA
Accurately predicts disease association of single nucleotide mutations
GESPA (GEnomic Single nucleotide Polymorphism Analyzer) is a bioinformatics tool for classifying Nonsynonymous Single Nucleotide Polymorphisms (nsSNPs). GESPA predicts if a nsSNP is pathogenic using reports from literature and various algorithms to assess conservation in orthologous and paralogous protein alignments. Using reports from literature, GESPA is also able to predict the phenotype of a nsSNP with high accuracy. The software can be used clinically to determine if observed nsSNPs are... -
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Gen3D
A tool for 3D genome and chromosome structural model construction
Gen3D is an application designed to determine three-dimensional genome and chromosome models. It uses chromosomal contact data to construct three-dimensional conformations. This method can generate three-dimensional chromosomal models satisfying a large portion of chromosomal contacts. The software is developed in Prof. Jianlin Cheng's Bioinformatics, Data Mining and Machine Learning Laboratory in the Computer Science Department at the University of Missouri - Columbia, USA. The project...
