Maximum Common Genome Alignment (MCGA) download

Maximum Common Genome Alignment (MCGA) Tool

MCGA is a bioinformatics analysis tool written in Python for generating core genome alignment for bacterial whole genome sequences which can be used to construct phylogenetic trees.

Features

Sequence clustering with CD-HIT software
Summarising core and accessory genome statistics
Summarise the shared or accessory gene content between strains
Creating multiple sequence alignments based on core gene content
Identify polymorphic sites in 'core genome' sequence alignments

Project Activity

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License

GNU Library or Lesser General Public License version 3.0 (LGPLv3)

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Additional Project Details

Intended Audience

Science/Research

User Interface

Command-line

Programming Language

Python

Related Categories

Python Bio-Informatics Software

Registered

2015-05-27

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