Search Results for "genetic" - Page 7
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Showing 707 open source projects for "genetic"
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Cyberphantom Alfa Colony
AI new tipe
This is an experimental project whose main objective is the creation of artificial intelligence (AI) new tipe. At the core of this idea is the use of special genetic algorithm that emulates the single-celled organism. The colony of such cybernetic organisms can give rise to a "reasonable" network that have a huge intellect and computing power. -
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X-PlantForm
L-system 3D plant generation with Blender and genetic algorithms
X-PlantForm handles parametric L-system generation as well as their evolution using genetic algorithms and interactive evolution techniques. This project is integrated with Blender3D, allowing automatic 3D rendering of generated plants and exports in .png Includes also the communication with a server for interactive generation through a web browser. -
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outbreaker
outbreaker
A R package for disease outbreak reconstruction using epidemiological and genetic data. -
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Genetic Programming in OpenCL is a parallel implementation of genetic programming targeted at heterogeneous devices, such as CPU and GPU. It is written in OpenCL, an open standard for portable parallel programming across many computing platforms.
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SVS-GSM31
Sistema de votação por sms
Software experimental para realização de pequenas eleições ( menos de 3.456.000 votos por dia) através de votação por sms. utilizando a tecnologia GSM através de celulares ou modens GSM. Pode ser utilizado também para pesquisas sobre a opnião pública, promoções realizadas pela mídia etc. Velocidade média de recepção de votos: 40 sms/s Velocidade média de envio da confirmação do voto: 1 sms/s. -
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Cenobi
cost estimation and management accounting, using neural networks
Cenobi is designed for management accountants, not (only) for statisticians and data mining experts. Carefully arranged default settings make sure you can concentrate on Cenobi's many accounting features rather than worrying about setting up artificial neural networks or genetic algorithms, which are the main machine learning tools under Cenobi's hood. Cenobi's main benefits are: - ease of use - Utilizing artificial neural networks to estimate cost relationships, Cenobi is able... -
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diggit
R package for DIGGIT algorithm
DIGGIT identify genetic variants associated with drivers of specific physiopathologic states. I computes the statistical association between the presence of genetic variants (CNV or SNP) and the activity of proteins driving physiologic or pathologic phenotype. It requires large gene expression and genetic variants datasets and depends on context-specific regulatory networks including transcriptional interactomes (usually reverse engineered by the ARACNe algorithm) and post-translational... -
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deapheap
Deap is a doubly heap for both min and max number access.
A deap is a doubly priority queue for efficient data operations. Both insertion and deletion operations take O(log(N)) time. Access of min or max takes constant time. It can be useful when both min and max are needed in the queue. It can also be used in situations where the number of items is too large and items with low priorities can be dropped with keep memory footprint small. -
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CViT - Chromosome Viewing Tool. A collection of Perl scripts that enable quick visualizations of features on linkage groups, psuedochromosomes or cytogenetic maps. Intended for whole-genome views of data but can be used to create images of single chromosomes/linkage groups, contigs, or BACs, or even proteins -- any feature that has a location on a backbone. Handles most standard genetic/genomic coordinate systems. Reads GFF3 data and produces a PNG or SVG image.
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Securden Privileged Account ManagerDiscover and manage administrator, service, and web app passwords, keys, and identities. Automate management with approval workflows. Centrally control, audit, monitor, and record all access to critical IT assets.
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ESTReMo
An evolutionary simulator of transcription regulatory networks
ESTReMo is a genetic algorithm-based simulator to explore the evolution of transcription factors and their binding motifs on realistic genomic backgrounds. -
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NeuroSolutions: Formula Generator
Utility converts the weights file of a MLP Breadboard into a formula
The NeuroSolutions: Formula Generator utility converts the weights file of a default MLP breadboard (1-hidden layer with a TanhAxon in the hidden layer and either a TanhAxon or BiasAxon in the output layer) into a usable formula that can be copied and pasted into your own programs to compute the output of the trained neural network. -
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adegenet
an R package for the exploratory analysis of genetic and genomic data
an R package for the exploratory analysis of genetic and genomic data -
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EurekaOptima is a framework for optimization containing the implementation of several algorithms like Genetic Algorithm (GA), Clonal Selection Algorithm (CLONALG), Grammatical Evolution (GE), Differential Evolution (DE), and Evolution Strategy (ES).
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SimpleMap
A tool to streamline high density genetic linkage group constrcution
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quickGA-m
A quick (messy?) genetic algorithm to solve TSP
A quick genetic algorithm to solve TSP scenarios. Written in Matlab. Circa June 2012. -
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Evolutionary Nursery
A simple genetic algorithm for numerical optimization
Evolutionary nursery is a result for my passion for developing genetic algorithms. I implemented this simple GA in 2008. This is especially intended for numerical optimization problems. -
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Grammatical Optimization
A java based framework for grammatical evolution.
This project is a result for my curiosity for how grammatical evolution (GE) works. Eventually, I made this wrapper for GE that should work with any numerical optimization algorithm. So the idea behind GE is that it takes production rules for computer programs using a context free grammar in Backus Naur form. The production rules can be used to evolve computer programs by running an algorithm such as a genetic algorithm or a particle swarm optimizer in the background. -
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Java Beagle
A symbolic regression platform in java
Java beagle is my gratitude for genetic programming. It is based on beagle puppy, by open-beagle project. It is mainly designed for symbolic regression tasks. It implements a number of other algorithms for more efficient symbolic regression. These include lexicographic parsimony pressure, linear scaling and subtree caching. -
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JAS is a java library for creating agent based simulations. It features a discrete-event time engine, APIs for network simulation design, powerful yet easy-to-use implementations of Genetic Algorithms and Neural Networks.
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Threadsafe C library for genetic optimisation (differential evolution) of data. Most often used for least squares fitting. But you can supply your own fit function and your own cost function.
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Evokit is an integrated environment for developing evolutionary computation algorithms. It is built around Java and the Eclipse platform, and will support several different libraries including ECJ.
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COV2HTML
A visualization and analysis tool of Bacterial NGS data for Biologists
COV2HTML provides an easy and 'in home' web interface for biologists that allows coverage visualization of the NGS alignment needed for the analysis. It combines two essential processes: (i) MAP2COV, a tool that converts the huge NGS mapping or coverage files into light specific coverage files which contains genetic elements informations. (ii) COV2HTML, a visualization interface allowing a real-time analysis of data with selected criteria. Thus this interface offers a visualization of NGS... -
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GenoCAD is a CAD software for synthetic biology. This application provides a web-based tool to design plasmids, artificial gene networks, and other synthetic genetic systems composed of standard genetic parts. It includes a parts management system, a rule-based design tool, and a simulation engine. This project has morphed into a SaaS model. The open source code is no longer maintained.
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FamSeq
Variant calling on the basis of pedigree information
... implementations of the Mendelian genetic model: the Bayesian network algorithm, Elston-Stewart algorithm and Markov chain Monte Carlo algorithm. To make the software efficient and applicable to large families, we parallelized the Bayesian network algorithm that copes with pedigrees with inbreeding loops without losing calculation precision on an NVIDIA® graphics processing unit.