Search Results for "r package xmsannotator" - Page 6
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Showing 261 open source projects for "r package xmsannotator"
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HubSpot is an AI-powered customer platform with all the software, integrations, and resources you need to connect your marketing, sales, and customer service. HubSpot's connected platform enables you to grow your business faster by focusing on what matters most: your customers.
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PRTG Network Monitor is an all-inclusive monitoring software solution developed by Paessler. Equipped with an easy-to-use, intuitive interface with a cutting-edge monitoring engine, PRTG Network Monitor optimizes connections and workloads as well as reduces operational costs by avoiding outages while saving time and controlling service level agreements (SLAs). The solution is packed with specialized monitoring features that include flexible alerting, cluster failover solution, distributed monitoring, in-depth reporting, maps and dashboards, and more.
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iHeatmap
Build a heatmap through interactive way
Help researcher to build a heatmap through interactive way. Now use python to provide a GUI for a public R package heatmap3. Users need to install heatmap3 package from CRAN. -
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Strandseq-InvertR
predicts inversions in Strand-seq data
Invert.R is a custom, R-based bioinformatic package that localizes and genotypes putative inversions in single cells. The program systematically assesses strand orientation of Strand-seq libraries using a read-based sliding window strategy to calculate Watson-Crick ratios. It assigns locale strand states based on these ratios and predicts inversions based on regional changes in strand state. The source code of this package is freely available. -
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T-A-N-K
T-A-N-K (THE-ANNIHILATE-NETWORK-KILLER) THE WORLDS FIRST DoS toolkit.
THE-ANNIHILATE-NETWORK-KILLER Also called T-A-N-K or TANK. Is the first toolkit released for DoS and load-testing. it is designed for testing servers on how well they will stand up to a DoS attack. This is also a collection of DoS tools put in an easy package, designed to help admins, tech consultants, programmers, hosting providers and many more. TANK is in its first stage. Please note that the source is in the zip file. Current files include LOIC-0, LOIC SLOW, R-U-D-Y, GoldenEye, LOWC... -
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CanReg5 (moved to Github)
Canreg5 is a software package for population based cancer registries
Cancer registries need a tool to input, store, check and analyse their data. If these data are also coded and verified in a standard way, it facilitates the production of comparable analyses across registry populations. The main goal of the CanReg5 project is to provide a flexible and easy to use tool to accomplish these objectives. CanReg5 is a multi user, multi platform, open source tool to input, store, check and analyse cancer registry data. It has modules to do: data entry,... -
Google Cloud’s AI-powered APIs help you translate documents, websites, apps, audio files, videos, and more at scale with best-in-class quality and enterprise-grade control and security.
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hSDM
R package for hierarchical species distribution models
hSDM is an R package for hierarchical species distribution models. Such models allows interpreting the observations (occurrence and abundance of a species) as a result of several hierarchical processes including ecological processes (habitat suitability, spatial dependence and anthropogenic disturbance) and observation processes (species detectability). Hierarchical species distribution models are essential for accurately characterizing the environmental response of species, predicting... -
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...) 2. Copy the userdata.dat and settingdata.dat files 3. Hit on the keyboard the Windows Key+R to open the Run window, Type %AppData% in the Open text field then click OK 4. In the Application Data folder opened, got to folder DebtorsListSaver then paste the copied userdata.dat and settingdata.dat files 5. Close the Application Data folder. 6. Done. Compatibility Working on Windows XP and Windows 7 requirements: .NET framework v4 Microsoft Visual C++ 2010 Redistributable Package (x86)
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Gekko Timeseries Software
Timeseries handling, and solving of large-scale economic models
Gekko Timeseries Software is a free time-series oriented software package for timeseries handling, and solving and analyzing large-scale economic models. Since 2009, Gekko is being used by Danish ministeries, banks, interest groups and universities, for the simulation of economic and energy-related models. The software runs under Windows (.NET), and is open source (GNU GPL) -
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This is an R package for the Mass spectrometry Research. The MrR can be used to analyze the mass spectrometry data for baseline correction, denoising, peak detection, peak alignment, peak normalization, and biomarker discovery.
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R-gregmisc is a set of extension package for the open-source statistical environment/language "R''. It includes functions for plotting (gplots), data manupulation (gdata), modeling (gmodels), and programming tools (gtools), creation and management of sub-processes (fork), determing sample sizes for -omics experiments (ssize), and a variety of other packages.
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Drive your organization forward with the right solution at the right price. AI-powered continuous accounting and ERP to support your growth now and into the future.
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EDDA
Experiment Design for Differential Abundance Analysis
.... “The Importance of Study Design for Detecting Differentially Abundant Features in High-Throughput Experiments.” Genome Biology 2014;15(12):527 (http://www.ncbi.nlm.nih.gov/pubmed/25517037/). An accompanying web server (http://edda.gis.a-star.edu.sg/) is available for easy access to some functionality of EDDA. Additionally a Bioconductor package (http://www.bioconductor.org/packages/release/bioc/html/EDDA.html) is available for easy installation of EDDA R package. -
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miRLAB
miRLAB: an R package for exploring miRNA-mRNA regulatory relationships
miRLAB is an R package for automating the procedure of inferring and validating miRNA-mRNA regulatory relationships. The package provides a complete set of pipelines for testing new methods and analysing new expression datasets. miRLAB includes a pipeline to obtain matched miRNA and mRNA expression datasets directly from The Cancer Genome Atlas (TCGA, based on TCGA Assembler), the benchmark computational methods for inferring miRNA-mRNA regulatory relationships, the functions for validating... -
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dupRadar
Quality control for PCR artefacts in RNA-Seq data
dupRadar is an R package which is part of the Bioconductor project . It requires mapped, duplicate marked RNA-Seq reads as a bam file and a gene annotation file in GTF format and produces a table with per gene values such as read counts, percentage of duplicate reads, normalized read counts. The package provides functions for plotting and analyzing the duplication rates dependent on the expression levels. Install it from R with: R> source("https://bioconductor.org/biocLite.R") R... -
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FuncEpiMod
Identification of Functional Epigenetic Modules (FEM)
An R-package implementing an algorithm, called FEM, for identifying genes modules of coordinated differential expression and differential methylation associated with a phenotype of interest. The modules are inferred as heavy subgraphs on an interaction network where weights are constructed from the statistics of differential expression and differential methylation. Note: latest version of R-package will be available from Bioconductor (www.bioconductor.org) -
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This site contains four packages of Mass and mass-based density estimation. 1. The first package is about the basic mass estimation (including one-dimensional mass estimation and Half-Space Tree based multi-dimensional mass estimation). This packages contains the necessary codes to run on MATLAB. 2. The second package includes source and object files of DEMass-DBSCAN to be used with the WEKA system. 3. The third package DEMassBayes includes the source and object files of a Bayesian...
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Salstat2
statistical package designed for the end user, multiplatform
Salstat2 is an statistical package written in python and designed for the end user It has a graphical user interface and also it is scriptable, It's multiplatform, It has a graphic system inherited from matplotlib, It allows you to use different libraries like numpy - for numerical calculations, it also lets you to interact with Microsoft Excel (R) by using a com client under windows(R) platform and finally you can create your own dialogs by using the interactive shell or the script panel. -
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LowMACA
Low frequency Mutation Analysis via Consensus Alignment
The remarkable efforts recently carried out to fully understand the mutational landscape of various kinds of cancer have revealed that the mutational processes can be extremely variable depending on the tumor type and the clinical features of patients. Thanks to these efforts, we have reached a clear picture of the most commonly mutated genes in various types of cancer. However, we are still far from a complete picture of rarely mutated genes, which can be an important target for... -
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CoGA
R package for differential co-expression analysis
CoGA (Co-expression Graph Analyzer) is an R package to identify differentially co-expressed gene sets between two phenotypes. The software infers gene regulatory networks from gene expression data, and compares structural properties of the inferred networks based on their spectrum distributions. It also compares the networks in terms of their gene centralities, clustering coefficients and shortest path lengths. In addition to the differential co-expression analyses, the tool provides graphical... -
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NetView P
Population Genomics Network Analysis Pipeline
NetView P has been re-structured as a package for R and moved to GitHub: https://github.com/esteinig/netview -
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PROMETHEElite
Implementation of the PROMETHEE-Gaia methodology in R
This package contains 4 main functions taking a matrix of numeric values as input and a list of preference Stuctures (see function description): 1) PROMETHEE I and II 2) DEAL-PROMETHEE 3) PEA 4) Gaia visualization -
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Drug Extraction
Drug name extraction
Drug name recognition and normalisation/grounding to DrugBank ids and standard names. Package provides 2 taggers: 1. DrugTagger - CRF-based with DrugBank presence feature (see feature set for details). 2. DrugnameGazetteer - gazetteer/dictionary-based. Dictionary created from DrugBank.ca database. Both taggers include grounding/normalisation to DrugBank ids and standard names. Feature set: Word, Word-1, Word+1, Word-1_Word, Word_Word+1, DrugBankPresence, POS DrugBankPresence feature... -
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cati
Community Assembly by Traits: Individuals and beyond (R package)
The up to date version of the cati package is available here: https://github.com/adrientaudiere/cati This R package provides functions to calculate T-statistics (Tstats function) and other uni-traits metrics (com.index function) to test community assembly traits measured on individuals and beyond (e.g. populations, functional groups). Variance partitioning (partvar function) and density plot (plot_dens function) are also available. Finaly, this package includes functions to summarize... -
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Tux Hat Linux
What you see, is what you get! GNU/Linux Arch Based Distro
.../unixwz0r # Info: The Live ISO is under 700mb and can be put on a CD-R/DVD-R/USB and boot up on any x86 & x86_64 PC computers. Fluxbox has a simular config to FluxBSD, and Fluxbox has been updated to 1.3.7. # IRC Freenode: irc.freenode.net #bsdgeekclub @UNIXwz0r (owner) Tux Hat Linux Project # More Screenshots http://ipodpunker.deviantart.com -
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Hackathon for Outbreak Analysis in R
A hackathon for the analysis of disease outbreaks in R
This is the sourceforge project supporting "Hackout: A hackathon for the analysis of disease outbreaks in R". It includes a repository for the collective development of the project's R package. -
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EsiAisParser
Robust Automatic Identification System Parser in Java
This package supports the parsing of AIS messages in Java. AIS, the Automatic Identification System, is a system aiming at improving maritime safety by exchanging messages between ships, other vehicles in particular aircraft involved in search-and-rescue (SAR), and (fixed) base stations. To be precise, this package support the ITU-R M.1371-4 AIS standard. See our extensive javadoc and in particular the class AISParser for more information on how to use this package. See the ESI AIS Parser... -
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DESN
Differential activE sub-Network (DEN): R/Bioconductor based package
... in discerning differential gene expression across diverse conditions. Computational biology is in need of methods for integration of static networks and gene expression data, since it provides interesting insights into the dynamics of biological systems. DEN is an R/Bioconductor based package designed to assemble different types of human bio-molecular interactions as a complete interactome and contains functions to extract dynamic active networks by integration of gene expression data.