Search Results for "r package xmsannotator"
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Showing 45 open source projects for "r package xmsannotator"
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gt R
Easily generate information-rich, publication-quality tables from R
With the gt package, anyone can make wonderful-looking tables using the R programming language. The gt philosophy: we can construct a wide variety of useful tables with a cohesive set of table parts. These include the table header, the stub, the column labels and spanner column labels, the table body, and the table footer. It all begins with table data (be it a tibble or a data frame). You then decide how to compose your gt table with the elements and formatting you need for the task at hand... -
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JuliaCall for Seamless Integration of R
Embed Julia in R
Package JuliaCall is an R interface to Julia, which is a high-level, high-performance dynamic programming language for numerical computing. Below is an image for Mandelbrot set. JuliaCall brings more than 100 times speedup of the calculation. -
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esquisse
RStudio add-in to make plots interactively with ggplot2
The purpose of this add-in is to let you explore your data quickly to extract the information they hold. You can create visualization with {ggplot2}, filter data with {dplyr} and retrieve generated code. This addin allows you to interactively explore your data by visualizing it with the ggplot2 package. It allows you to draw bar plots, curves, scatter plots, histograms, boxplot and sf objects, then export the graph or retrieve the code to reproduce the graph. This addin allows you... -
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JuliaConnectoR
A functionally oriented interface for calling Julia from R
This R-package provides a functionally oriented interface between R and Julia. The goal is to call functions from Julia packages directly as R functions. Julia functions imported via the JuliaConnectoR can accept and return R variables. It is also possible to pass R functions as arguments in place of Julia functions, which allows callbacks from Julia to R. From a technical perspective, R data structures are serialized with an optimized custom streaming format, sent to a (local) Julia TCP server... -
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plotly
An interactive graphing library for R
This part of the book teaches you how to leverage the plotly R package to create a variety of interactive graphics. There are two main ways to creating a plotly object: either by transforming a ggplot2 object (via ggplotly()) into a plotly object or by directly initializing a plotly object with plot_ly()/plot_geo()/plot_mapbox(). Both approaches have somewhat complementary strengths and weaknesses, so it can pay off to learn both approaches. Moreover, both approaches are an implementation... -
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awesome-single-cell
Community-curated list of software packages and data resources
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc. List of software packages (and the people developing these methods) for single-cell data analysis, including RNA-seq, ATAC-seq, etc. Rapid, accurate and memory-frugal preprocessing of single-cell and single-nucleus RNA-seq data. Find bimodal, unimodal, and multimodal features in your data. Ascend is an R package comprised of fast, streamlined analysis functions optimized to address... -
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coronavirus
The coronavirus dataset
The coronavirus package gives a tidy format dataset of the 2019 Novel Coronavirus COVID-19 (2019-nCoV) epidemic. Relevant and updated information about the virus, such as summary of new cases by country and total number of cases by region can be retrieved from this package. The raw data is pulled and arranged by the Johns Hopkins University Center for Systems Science and Engineering, which is gathered from various leading sources including the World Health Organization, China CDC, US CDC... -
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RCall.jl
Call R from Julia
R is a language for statistical computing and graphics that has been around for a couple of decades and it has one of the most impressive collections of scientific and statistical packages of any environment. Recently, the Julia language has become an attractive alternative because it provides the remarkable performance of a low-level language without sacrificing the readability and ease of use of high-level languages. However, Julia still lacks the depth and scale of the R package environment... -
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harmonypy
Integrate multiple high-dimensional datasets with fuzzy k-means
Harmony is an algorithm for integrating multiple high-dimensional datasets. harmonypy is a port of the harmony R package by Ilya Korsunsky. Harmony is a general-purpose R package with an efficient algorithm for integrating multiple data sets. It is especially useful for large single-cell datasets such as single-cell RNA-seq. -
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Indicators.jl
Financial market technical analysis & indicators in Julia
Indicators is a Julia package offering efficient implementations of many technical analysis indicators and algorithms. This work is inspired by the TTR package in R and the Python implementation of TA-Lib, and the ultimate goal is to implement all of the functionality of these offerings (and more) in Julia. This package has been written to be able to interface with both native Julia Array types, as well as the TS time series type from the Temporal package. Contributions are of course always... -
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pointblank
Data quality assessment and metadata reporting for data frames
With the pointblank package it’s really easy to methodically validate your data whether in the form of data frames or as database tables. On top of the validation toolset, the package gives you the means to provide and keep up-to-date with the information that defines your tables. For table validation, the agent object works with a large collection of simple (yet powerful!) validation functions. We can enable much more sophisticated validation checks by using custom expressions, segmenting... -
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CounterfactualExplanations.jl
A package for Counterfactual Explanations and Algorithmic Recourse
CounterfactualExplanations.jl is a package for generating Counterfactual Explanations (CE) and Algorithmic Recourse (AR) for black-box algorithms. Both CE and AR are related tools for explainable artificial intelligence (XAI). While the package is written purely in Julia, it can be used to explain machine learning algorithms developed and trained in other popular programming languages like Python and R. See below for a short introduction and other resources or dive straight into the docs. -
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Rotations.jl
Julia implementations for different rotation parameterizations
3D rotations made easy in Julia. This package implements various 3D rotation parameterizations and defines conversions between them. At their heart, each rotation parameterization is a 3×3 unitary (orthogonal) matrix (based on the StaticArrays.jl package), and acts to rotate a 3-vector about the origin through matrix-vector multiplication. While the RotMatrix type is a dense representation of a 3×3 matrix, we also have sparse (or computed, rather) representations such as quaternions, angle-axis... -
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BetaML.jl
Beta Machine Learning Toolkit
The Beta Machine Learning Toolkit is a package including many algorithms and utilities to implement machine learning workflows in Julia, Python, R and any other language with a Julia binding. All models are implemented entirely in Julia and are hosted in the repository itself (i.e. they are not wrapper to third-party models). If your favorite option or model is missing, you can try to implement it yourself and open a pull request to share it (see the section Contribute below) or request its... -
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DataQualityDashboard
A tool to help improve data quality standards in data science
The goal of the Data Quality Dashboard (DQD) project is to design and develop an open-source tool to expose and evaluate observational data quality. This package will run a series of data quality checks against an OMOP CDM instance (currently supports v5.4, v5.3 and v5.2). It systematically runs the checks, evaluates the checks against some pre-specified threshold, and then communicates what was done in a transparent and easily understandable way. The quality checks were organized according... -
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gganimate
A Grammar of Animated Graphics
gganimate extends the grammar of graphics as implemented by ggplot2 to include the description of animation. It does this by providing a range of new grammar classes that can be added to the plot object in order to customize how it should change with time. Here we take a simple boxplot of fuel consumption as a function of cylinders and let it transition between the number of gears available in the cars. As this is a discrete split (gear being best described as an ordered factor) we use... -
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Sundials.jl
Julia interface to Sundials, including a nonlinear solver
This is a suite for numerically solving differential equations written in Julia and available for use in Julia, Python, and R. The purpose of this package is to supply efficient Julia implementations of solvers for various differential equations. -
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a R package. 'Qair' gives access to data bases used by air quality monitoring associations in France. It also contains functions to manipualte air quality datas.
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Hyperspectral data analysis in R
Handling and basic analysis of hyperspectral data in R
The hsdar package contains classes and functions to manage, analyse and simulate hyperspectral data. These might be either spectrometer measurements or hyperspectral images through the interface of rgdal. -
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bootf2BCA
computing f2 bootstrap CI BCA
Computing similarity factor (f2) bootstrap bias corrected and accelerated confidence interval -
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csapAIH
Classificar Condições Sensíveis à Atenção Primária
Pacote em R: Classifica códigos da CID-10 segundo a Lista Brasileira de Internações por Condições Sensíveis à Atenção Primária e oferece funcionalidades para o manejo dos arquivos reduzidos da AIH. R package: Classify ICD-10 codes according to the Brazilian List of hospitalizations for Ambulatory Care Sensitive Conditions, and afford functionalities to the work with the Brazilian Hospital Information System databases (BD-SIH/SUS). -
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OmicSelector
Feature selection and deep learning modeling for omic biomarker study
OmicSelector is an environment, Docker-based web application, and R package for biomarker signature selection (feature selection) from high-throughput experiments and others. It was initially developed for miRNA-seq (small RNA, smRNA-seq; hence the name was miRNAselector), RNA-seq and qPCR, but can be applied for every problem where numeric features should be selected to counteract overfitting of the models. Using our tool, you can choose features, like miRNAs, with the most significant... -
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R-package to perform analysis of landmark based geometric morphometrics. Installation instructions: https://github.com/zarquon42b/Morpho/blob/master/README.md
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LSRMTools
An implementation of Linear Stochastic Reserving Methods.
An implementation of Linear Stochastic Reserving Methods used for claims reserving in general insurance either as R-package or as dll for MS Windows. It provides an AxtiveX as well as a simple function library (dll) and corresponding Excel Add-Ins. -
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Learn Julia the Hard Way
Learn Julia the hard way
The Julia base package is pretty big, although at the same time, there are lots of other packages around to expand it with. The result is that on the whole, it is impossible to give a thorough overview of all that Julia can do in just a few brief exercises. Therefore, I had to adopt a little 'bias', or 'slant' if you please, in deciding what to focus on and what to ignore. Julia is a technical computing language, although it does have the capabilities of any general-purpose language and you'd...