Search Results for "r package xmsannotator"
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Showing 24 open source projects for "r package xmsannotator"
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gt R
Easily generate information-rich, publication-quality tables from R
With the gt package, anyone can make wonderful-looking tables using the R programming language. The gt philosophy: we can construct a wide variety of useful tables with a cohesive set of table parts. These include the table header, the stub, the column labels and spanner column labels, the table body, and the table footer. It all begins with table data (be it a tibble or a data frame). You then decide how to compose your gt table with the elements and formatting you need for the task at hand... -
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esquisse
RStudio add-in to make plots interactively with ggplot2
The purpose of this add-in is to let you explore your data quickly to extract the information they hold. You can create visualization with {ggplot2}, filter data with {dplyr} and retrieve generated code. This addin allows you to interactively explore your data by visualizing it with the ggplot2 package. It allows you to draw bar plots, curves, scatter plots, histograms, boxplot and sf objects, then export the graph or retrieve the code to reproduce the graph. This addin allows you... -
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JuliaConnectoR
A functionally oriented interface for calling Julia from R
This R-package provides a functionally oriented interface between R and Julia. The goal is to call functions from Julia packages directly as R functions. Julia functions imported via the JuliaConnectoR can accept and return R variables. It is also possible to pass R functions as arguments in place of Julia functions, which allows callbacks from Julia to R. From a technical perspective, R data structures are serialized with an optimized custom streaming format, sent to a (local) Julia TCP server... -
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plotly
An interactive graphing library for R
This part of the book teaches you how to leverage the plotly R package to create a variety of interactive graphics. There are two main ways to creating a plotly object: either by transforming a ggplot2 object (via ggplotly()) into a plotly object or by directly initializing a plotly object with plot_ly()/plot_geo()/plot_mapbox(). Both approaches have somewhat complementary strengths and weaknesses, so it can pay off to learn both approaches. Moreover, both approaches are an implementation... -
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ShinyItemAnalysis
Test and Item Analysis via Shiny
ShinyItemAnalysis is an R package including functions and interactive shiny application for the psychometric analysis of educational tests, psychological assessments, health-related and other types of multi-item measurements, or ratings from multiple raters. Exploration of total and standard scores. Analysis of measurement error and reliability. Analysis of correlation structure and validity. Traditional item analysis. Item analysis with regression models. Item analysis with IRT models... -
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psychmeta
Psychometric meta-analysis toolkit
The psychmeta package provides tools for computing bare-bones and psychometric meta-analyses and for generating psychometric data for use in meta-analysis simulations. Currently, the package supports bare-bones, individual-correction, and artifact-distribution methods for meta-analyzing correlations and d values. Please refer to the overview tutorial vignette for an introduction to psychmeta’s functions and workflows. psychmeta is hosted on both CRAN and GitHub. Documentation for psychmeta’s... -
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gm
R Package for Music Score and Audio Generation
Create music easily, and show musical scores and audio files in R Markdown documents, R Jupyter Notebooks and RStudio. -
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blavaan
An R package for Bayesian structural equation modeling
blavaan is a free, open-source R package for Bayesian latent variable analysis. It relies on JAGS and Stan to estimate models via MCMC. The blavaan functions and syntax are similar to lavaan. The development version of blavaan (containing updates not yet on CRAN) can be installed via the command provided in the documentation. Compilation is required; this may be a problem for users who currently rely on a binary version of blavaan from CRAN. The blavaan package depends on the lavaan package... -
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meditator
Miscellaneous tools for meditation
Miscellaneous tools for meditation and mental health. Optionally a very basic R package for meditation and mental health. Please close your eyes and take one deep breath. Feel how long the in-breath is. Feel how long the out-breath is. -
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pagedown
Paginate the HTML Output of R Markdown with CSS for Print
Paginate the HTML Output of R Markdown with CSS for Print. You only need a modern web browser (e.g., Google Chrome or Microsoft Edge) to generate PDF. No need to install LaTeX to get beautiful PDFs. This R package stands on the shoulders of two giants to support typesetting with CSS for R Markdown documents: Paged.js and ReLaXed (we only borrowed some CSS from the ReLaXed repo and didn't really use the Node package). -
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IRkernel
R kernel for Jupyter
For detailed requirements and install instructions see irkernel.github.io. Per default IRkernel::installspec() will install a kernel with the name “ir” and a display name of “R”. Multiple calls will overwrite the kernel with a kernel spec pointing to the last R interpreter you called that commands from. You can install kernels for multiple versions of R by supplying a name and display name argument to the install spec() call (You still need to install these packages in all interpreters you want... -
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latex2exp
Use LaTeX in R graphics
latex2exp is an R package that lets you use LaTeX in plots. It parses and converts LaTeX to R’s custom plotmath expressions. You can read the full documentation on the package’s website. Expressions returned by latex2exp can be used to create formatted text and mathematical formulas and symbols to be rendered as axis labels, annotations, legends, titles, etc. throughout R’s plotting system. -
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Huxtable
An R package to create styled tables in multiple output formats
Huxtable is an R package to create LaTeX and HTML tables, with a friendly, modern interface. Features include control over text styling, number format, background color, borders, padding, and alignment. Cells can span multiple rows and/or columns. Tables can be manipulated with standard R subsetting or dplyr functions. -
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rvest
Simple web scraping for R
rvest helps you scrape (or harvest) data from web pages. It is designed to work with magrittr to make it easy to express common web scraping tasks, inspired by libraries like beautiful soup and RoboBrowser. If you’re scraping multiple pages, I highly recommend using rvest in concert with polite. The polite package ensures that you’re respecting the robots.txt and not hammering the site with too many requests. -
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httr
httr: a friendly http package for R
httr is superseded: only changes necessary to keep it on CRAN will be made. We recommend using httr2 instead. The aim of httr is to provide a wrapper for the curl package, customized to the demands of modern web APIs. Functions for the most important http verbs: GET(), HEAD(), PATCH(), PUT(), DELETE() and POST(). Automatic connection sharing across requests to the same website (by default, curl handles are managed automatically), cookies are maintained across requests, and an up-to-date root... -
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pointblank
Data quality assessment and metadata reporting for data frames
With the pointblank package it’s really easy to methodically validate your data whether in the form of data frames or as database tables. On top of the validation toolset, the package gives you the means to provide and keep up-to-date with the information that defines your tables. For table validation, the agent object works with a large collection of simple (yet powerful!) validation functions. We can enable much more sophisticated validation checks by using custom expressions, segmenting... -
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gganimate
A Grammar of Animated Graphics
gganimate extends the grammar of graphics as implemented by ggplot2 to include the description of animation. It does this by providing a range of new grammar classes that can be added to the plot object in order to customize how it should change with time. Here we take a simple boxplot of fuel consumption as a function of cylinders and let it transition between the number of gears available in the cars. As this is a discrete split (gear being best described as an ordered factor) we use... -
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OmicSelector
Feature selection and deep learning modeling for omic biomarker study
OmicSelector is an environment, Docker-based web application, and R package for biomarker signature selection (feature selection) from high-throughput experiments and others. It was initially developed for miRNA-seq (small RNA, smRNA-seq; hence the name was miRNAselector), RNA-seq and qPCR, but can be applied for every problem where numeric features should be selected to counteract overfitting of the models. Using our tool, you can choose features, like miRNAs, with the most significant... -
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R Markdown Cookbook
R Markdown Cookbook
R Markdown Cookbook. A range of tips and tricks to make better use of R Markdown. R Markdown is a powerful tool for combining analysis and reporting into the same document. Since the birth of the rmarkdown package (Allaire, Xie, Dervieux, McPherson, et al. 2023) in early 2014, R Markdown has grown substantially from a package that supports a few output formats, to an extensive and diverse ecosystem that supports the creation of books, blogs, scientific articles, websites, and even resumes. -
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Harmony Data Integration
Fast, sensitive and accurate integration of single-cell data
Harmony is a general-purpose R package with an efficient algorithm for integrating multiple data sets. It is especially useful for large single-cell datasets such as single-cell RNA-seq. Harmony has been tested on R versions =4. Please consult the DESCRIPTION file for more details on required R packages. Harmony has been tested on Linux, OS X, and Windows platforms. -
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GDINA Package for Cognitively Diagnostic
Package for Cognitively Diagnostic Analyses
Estimating G-DINA model and a variety of widely-used models subsumed by the G-DINA model, including the DINA model, DINO model, additive-CDM (A-CDM), linear logistic model (LLM), reduced reparametrized unified model (RRUM), multiple-strategy DINA model for dichotomous responses. Estimating models within the G-DINA model framework using user-specified design matrix and link functions. Estimating Bugs-DINA, DINO and G-DINA models for dichotomous responses. Estimating sequential G-DINA model... -
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posterdown
Use RMarkdown to generate PDF Conference Posters via HTML
Welcome to Posterdown! This is my attempt to provide a semi-smooth workflow for those who wish to take their RMarkdown skills to the conference world. Many creature comforts from RMarkdown are available in this package such as Markdown section notation, figure captioning, and even citations like this one (Allaire, Xie, McPherson, et al. 2018). The rest of this example poster will show how you can insert typical conference poster features into your own document. Posterdown was created as a proof... -
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Open Intro Statistics
An open-source textbook written at the college level
... the "openintro" R package that is available from GitHub (https://github.com/OpenIntroOrg) if you would like to regenerate a figure. Other packages may also occasionally be required. -
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bookdownplus
Use R package bookdown for writing varied types of books and documents
The package bookdownplus (Zhao 2017a) is an extension of R bookdown (Xie 2016). It is a collection of multiple templates on the basis of LaTeX, which is tailored so that I can work happily under the umbrella of bookdown. bookdownplus helps you write academic journal articles, guitar books, chemical equations, mails, calendars, and diaries. bookdown features the collaboration of many fantastic tools. However, an R beginner might be confused or depressed in struggling in the flood of LaTeX, YAML...
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