Search Results for "algorithm" - Page 56
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Showing 2943 open source projects for "algorithm"
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Pepgrep
Tool for peptide MS2 pattern matching in MS tandem dataset
pepgrep offers a quick and friendly way to examine MS tandem output data by finding a spectral pattern matching selected peptide sequence. It is database-free command-line utility that uses Peptide-to-MS2 scoring algorithm. The Peptide-to-MS2 pattern matching can accumulate dozens of mass offsets corresponding to a variety of Post-Translational Modifications. Decoy peptide sequences are used with the tested peptide sequence to reduce false-positive results. Read article at: http://www.sciencedirect.com/science/article/pii/S1672022913000302 -
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JConstraints
Java Framework to implement solutions to solve constraints problems
...Just to name a few algorithms, the Framework can solve any constraints problems using: - Regular Backtracking; - A variety of Backjumping algorithms; - A variety of arc-consistency algorithms; - Local search algorithm; - Tabu search algorithm; - Maximize solutions: comming soon; - Minimize solutions: comming soon; The Framework also enables heuristic injections so that the developers can achieve greater performance of algorithms using their own heuristics. Version 1.0: Released! Version 1.1: Coming soon See the tutorial in the Wiki page to learn how to use this Framework. -
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Front end Interview Questions
Help the front End community to rock interview
Interview questions for front-end developers. Only for JS developers when they have to answer some side questions to make the interviewer comfortable. To rock the interview to achieve what you deserve and to improve your concepts about front-end technologies, I have consolidated a list of questions and answers. It's a one-stop solution for front end interview process. HTML might be the heart of a website, but least utilized and explored. js dude followed the same path and put some basic... -
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FALCON - Text Search Java Project
JSON based text search Java Project
----------------- - What is it? - ----------------- The "Falcon Search" is a JAVA API and tool to search inside the documents. It was originally started to search the content in pdf files under the project "HAWK Search". Searching with this tool is query-based not word-based as in most of the document search tools OR document readers. It also takes care of jumbling of words within query and spelling mistakes. Commonly used techniques in this project are Natural Language... -
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libcontc
Container library in C.
About Collection of data structures and operations that have been (and will continue to be) implemented in response to need. Container interface, naming and behavior is similar to the STL containers. Algorithm interface is in the spirit of the C standard library search and sort functions. Compatibility ISO C99, ISO C++98, ISO C++11. Performance These are designed to be general purpose, and reasonably efficient in most circumstances. Notes The biggest problem with these is type safety due to the use of pointer to void for type abstraction. ... -
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HRSS
Hybrid Relative Specificity Similarity based on Gene Ontology
This software provides a hybrid GO-based semantic similarity algorithm for evaluating the functional similarity between GO terms or gene products. The software uses the pre-downloaded GO database files and the GO annotation files. It allows the users to set organisms, and evidence codes ignored. The software is composed of five modules, getGODAG, getGOAnno, hrssmatrix, hrsstps and hrsspps. -
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SAWA calculates a semantic similarity coefficient between two sentences. Coefficient is expressed between "0" and "1", where: 0 means there is not semantic similarity among them; 1 vice versa.
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CalPCS
A pitch class set analyzer.
CalPCS is a free pitch class set calculator software. System requeriments: Java Runtime Environment 1.6 or above. Screen of at least 800x600px. Optional: A Java Sound Bank. The program displays for each set their normal order, classification, transposition, whether it is an inversion, prime form, interval vector and the invariant property. -
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constrainedLATIN
A one-dimensional implementation of a constrained LATIN method
constrainedLATIN illustrates a simple one-dimensional implementation of a constrained LATIN method for modelling quasi-brittle failure. Unlike classical LATIN methods, this novel algorithm can trace snap-back responses. Reference B. Vandoren, K. De Proft, A. Simone, and L. J. Sluys. A novel constrained LArge Time INcrement method for modelling quasi-brittle failure. Computer Methods in Applied Mechanics and Engineering, 265:148-162, 2013 -
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CPS StopWatch
A little stopwatch to manage your time
... + 2.8 Systray Icon PopMenu on systray B-Day survey + 2.7 - Generates form for AUX2 and AUX3 + 2.6.4 - Added Pause Button for AUX 8 (Boaventura) + 2.6.3 - Fixed close button when starting TalkTime (Rotermund) - Added Break Count to configuration + 2.6.1 - Added TalkTime (Daniel Fraga) - Added TalkTime Report with available time (Kleiton Santos) + 2.5.2 - Layout fix on report window (Tiago_Farias) - Auto PIN and double click on PIN button FIX (Fabiano_Ferreira) + 2.5 - Added Configuration Possibility - Added button to Configuration on Main Screen - Added Information Button on Main Screen - Improved time algorithm - Utilization of a Config.ini file to save personalizated settings. + 2.4.1 - Removed minimize button from main window - Fixed sound on last 20 seconds when using Windo -
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PageRank for wikipedia
PageRank algorithm for wikipedia pages on Amazon Elastic MapReduce
• Implemented the project using PageRank algorithm for Wikipedia pages on Amazon Elastic MapReduce. • Designed MapReduce jobs for red links removal, outlink adjacency graph, compute the total number of pages, PageRank calculation, sorting of PageRanks. • To run the project on amazon Elastic MapReduce specify jar location. Pass the directory locations as an argument of input and output respectively. -
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AS-peak
ASPeak: an abundance sensitive peak detection algorithm for RIP-Seq
...While peak identification in CHIP-Seq data has been extensively explored, there are few bioinformatics tools tailored to peak calling on the analogous datasets for RNA-binding proteins. Here we describe ASPeak, an implementation of an algorithm that we previously applied to detect peaks in Exon Junction Complex (EJC) RNA immunoprecipitation in tandem (RIPiT) experiments. Our peak detection algorithm yields stringent and robust target sets enabling sensitive motif finding and downstream functional analyses. -
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Brute-Force Sudoku Solver
Java, Brute Force, Recursive Sudoku Solver
This program prompts the user for a text file containing puzzle data, attempts to solve the puzzle using a brute force algorithm, and prints the solution along with the time it took to solve. I've included 3 sample puzzle files in the "res" folder. "Sub-box width/height" refers to the dimensions of the inner boxes in the puzzle. For example, a 9x9 puzzle has 9 3x3 sub-boxes. The 6x6 puzzle that I've included has sub-box dimensions of 3x2. This version does not contain any GUI components, so it must be run from the command line. -
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Maximum Gene Support Tree Approach
Maximum Gene-Support Tree Approach to Infer-ring a Spec
GeneSupport implements a genome-scale algorithm: Maximum Gene-Support Tree to estimate species tree from gene trees based on multilocus sequences. It provides a new option for multiple genes to infer species tree. It is incorporated into popular phylogentic program: PHYLIP package with the same usage and user interface. It is suitable for phylogenetic methods including not only Baysian, but also maximum parsimony, maximum likelihood, neighbour-joining and so on. -
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algorithmic trading testing
Testing framework for structures regarding performance.
...Software which supports this kind of operations has to introduce lowest possible latency by itself. Therefore analysing every possible element that may introduce latancy to algorithm is essential. Operations on structures (beside i/o operations - persistance as well as network communication) are typical places when improvements in performance should be looked for. When analyzing this kind of operations typically following things should be thorougly analyzed: - adding elements - getting / searching elements - removing elements Additionally it's crucial how the structure behaves in multithreaded environment (locking). ... -
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Algebraic Numbers
Visualization of the first few algebraic numbers
This is inspired by http://en.wikipedia.org/wiki/File:Algebraicszoom.png with some source code (especially the polynomial generating algorithm!) taken from http://en.wikipedia.org/wiki/User:Stephen_J._Brooks/algebraics/src -
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ProximityForest
Efficient Approximate Nearest Neighbors for General Metric Spaces
A proximity forest is a data structure that allows for efficient computation of approximate nearest neighbors of arbitrary data elements in a metric space. See: O'Hara and Draper, "Are You Using the Right Approximate Nearest Neighbor Algorithm?", WACV 2013 (best student paper award). One application of a ProximityForest is given in the following CVPR publication: Stephen O'Hara and Bruce A. Draper, "Scalable Action Recognition with a Subspace Forest," IEEE Conference on Computer Vision and Pattern Recognition, 2012. This source code is provided without warranty and is available under the GPL license. ... -
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yetris
Customizable Tetris(tm) clone on the terminal
yetris is a customizable Tetris(tm) clone for the terminal. It has some features found on modern adaptations and aims to please both casual players and Tetris(tm) enthusiasts. It has full textual interface. yetris was originally developed in C, now reprogrammed in C++ with ncurses. It runs on pretty much every terminal around here, but it's limited to POSIX systems. -
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kmul
Constant multiplication routine generator
...In order to calculate a constant integer multiplication, it uses the public domain routines presented in the work: Preston Briggs and Tim Harvey, "Multiplication by integer constants," Technical report, Rice University, July 1994. This technical report implements Bernstein's algorithm documented in: R. Bernstein, "Multiplication by integer constants," Software - Practice and Experience, Vol. 16, No. 7, pp. 641-652, July 1986. kmul can be used for emitting a NAC (generic assembly language) or ANSI C implementation of the multiplication. -
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MIT SPHERES Simulation (Release)
MIT's spacecraft simulator for control algorithm development
...The simulation code base consists of simulated versions of most of the SPHERES core flight code and additional code that simulates dynamics, communications, and other environmental interaction. The simulation is particularly valuable during the early stages of algorithm development and implementation as an aid in accelerating the learning curve for any Guest Scientist for SPHERES. Algorithms may be implemented in C or Embedded MATLAB and executed in the MATLAB simulation environment to verify general desired behavior. With some limitations, the code used in the simulation can be directly transferred to the SPHERES hardware. ... -
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TSPLib.Net
TSPLib wrapper for .Net
...This project provides .Net library wrapping up library files loading code, implements distance functions and all the TSPLib features. If you'd like to test your graph tour searching algorithm on a TSP lib will save you hours of reading in a data and adjusting your code to ensure that result are comparable. Delivering as a dll with .Net wrapper and a zip archive with all the original data files from TSPLIB95. This is still BETA, if something is not working or you need some extra features then just let me know. ... -
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niGA
Heterogenous Multiprocessor Scheduling Using Genetic Algorithms
Implementation of task scheduling using Genetics algorithm for heterogeneous parallel programming -
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Bin Packing with Genectic Algorithm
Bin Packing problem solved using Genectic Algorithm
This project contains a solution for a Bin Packing problem solved using Genectic Algorithms. The code in the project was created as a solution for a problem in a combinatorial optimization class at the Univeridade Federal do Rio Grande do Sul (UFRGS - Brasil) in 2007. -
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fingerprint recognition
pattern recognition
Fingerprint recognition algorithm demo, binarization part is done, minutiae match part is still under development. There is binarization result dump for reference. The binarization result is at the same level with some exceptional commercial software. For detail, you can check the blog here. If you're interested in this topic and willing to be involved, you can send me email (samuel.s.chan.2008#gmail.com, replace # by @) . -
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Sudoku MEA Solver is projet of desktop Sudoku automatic solver aplication written in C++ with using Qt4. It's based on my batchelor thesis project (Multiagent Evolutionar Algorithm for Sudoku).
