Search Results for "data collection algorithm" - Page 43
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Showing 1709 open source projects for "data collection algorithm"
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Sequence is a collection of nucleotides or amino acid residues which are connected with each other. Speaking biologically, a typical DNA/RNA sequence consist of nucleotides while a protein sequence consist of amino acids. In this project we aim to perform local sequence alignment between two nucleotide or amino acid sequences and find out structural or functional similarity.
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qlsdup
GUI based lightweight duplicate file finder / remover.
Simple GUI based lightweight duplicate file finder and remover. Configurable file search and preview (via external tools) option for file data. No command-line interface available! This is basically a reimplementation of dupfinder as: it doesn't compile on my computer, the executable won't work either, the projects seems dead and I didn't wanna work through the original code. So Look'n'Feel should be somewhat the same, though some changes have been made. Algorithm is simple and suitable for large file sets with few differences: basic set of duplicate candidates is determined by file size, then candidates are compared byte-wise. ... -
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A collection of tools that are easy to configure to take input from game controllers (gamepads, wiimotes, sixaxis controllers), and output midi or osc data for use in music programs
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VOC-DPM
Object detection system using deformable part models (DPMs)
...It implements both latent SVM training (where part assignments are treated as latent variables) and weak-label structural SVM (WL-SSVM) for learning from partially labeled data. The code integrates several enhancements: a star-cascade detection algorithm to speed up screening, context rescoring (re-ranking detections using contextual information), and various optimizations like in-memory training (rather than large on-disk data files). -
Total Network Visibility for Network Engineers and IT ManagersThis means every device on your network, and every interface on every device is automatically analyzed for performance, errors, QoS, and configuration.
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Simple CGI script which allows you to transfer sensitive ascii data (passwords, hashes, pem keys) via HTTPS. SSL MUST BE implemented by webserver. Algorithm: - Paste new data into textarea, submit. You get link Link consists of three md5 hashes from salt. File, containing your data, named that way. So, it is hard to bruteforce links/files. - Whenever link being opened, script reads file and prints its content into brower in text/plain content-type. ...
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RCFPD
Random Collection of Functions for Proteomics Data Analysis
An R package for distribution of data analysis functionality used by the Proteomics Core at Weill Cornell Medical College in Qatar. -
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hrefinder
Detection of homologous recombination events from SNP data
This software detects homologous recombination events (HREs) from SNP data. Based on SNP alleles calls and locations, it breaks the genomes into locally colinear blocks, and looks for cases where SNPs do not agree with the vertical pattern of inheritance in a phylogeny. It applies a dynamic programming algorithm to model whether changes within a block are likely a result of mutations, sequencing errors, or HRE. -
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MDSTk is a collection of 2D/3D image processing tools aimed at medical images. It contains routines for volume data processing (3D filtering, segmentation, etc.) as well as fast low-level vector graphics library for surface and tetrahedral meshing. MDSTk has been forked by 3Dim Laboratory s.r.o. to provide better support and further push its development forward.
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Sharp Statistics
A simple program for comparing data sets with simple algorithms.
Replace the data in the data.db file with your own data using an sqlite3 manager. Tables are read as data set names, and the values are read as the data points of the data sets. Load the application, choose an algorithm, and the program will find the pairs that best match each other. -
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GPU Edge Detector
GPU Interactive Program For Edge detection
This is a standalone, all in one Edge Detector that is mainly running on GPU using the CUDA technology. Each algorithm also has an OpenCV counterpart which is the closest one in terms of speed. This project is partly based on the Sobel Filter sample available as part of the CUDA SDK. This project also partly uses the OpenCV library to load different types of image. This program includes: Prewitt filter, Roberts Cross, Canny edge detector and finally Sobel filter with the ability to modify... -
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hrefinder
Detection of homologous recombination events from SNP data
This software detects homologous recombination events (HREs) from SNP data. Based on SNP alleles calls and locations, it breaks the genomes into locally colinear blocks, and looks for cases where SNPs do not agree with the vertical pattern of inheritance in a phylogeny. It applies a dynamic programming algorithm to model whether changes within a block are likely a result of mutations, sequencing errors, or HRE. -
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OpenERP Java Report Helper
A Java library to facilitate writing OpenERP reports using Java tools
This library hopes to provide a helper class to be used by any Java based reporting tool like Jasper/Pentaho. The library provides a Java Swing user interface for data source configuration and a data interface for data collection. A Java report client needs to control the workflow and persistence of the configuration information while the library will handle data source configuration and data collection. -
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COMP Superscalar
COMP superscalar exploits the inherent parallelism of applications.
COMP Superscalar offers a straightforward programming model that particularly targets Java applications. The simplicity of this programming model keeps the Cloud transparent to the user, who is able to program their applications in a Cloud-unaware fashion. The user is only required to select the tasks to be run on the Cloud, while the application can remain completely free of Cloud-related calls. -
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java quickShort
quick short in java
This simple shorting large data from file using quickshort algorithm -
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QuasiRecomb
Probabilistic inference of viral Quasispecies
...We present a jumping hidden Markov model that describes the generation of the viral quasispecies and a method to infer its parameters by analysing next generation sequencing data. We offer an implementation of the EM algorithm to find maximum a posteriori estimates of the model parameters and a method to estimate the distribution of viral strains in the quasispecies. The model is validated on simulated data, showing the advantage of explicitly taking the recombination process into account, and tested by applying to reads obtained from experimental HIV samples. -
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KALIMAT Multipurpose Arabic Corpus
A corpus that could be of help for researchers working on Arabic NLP
KALIMAT a Multipurpose Arabic Corpus We are pleased to announce the immediate availability of KALIMAT 1.0, KALIMAT is an Arabic natural language resource that consists of: 1) 20,291 Arabic articles collected from the Omani newspaper Alwatan by (Abbas et al. 2011). 2) 20,291 Extractive Single-document system summaries. 3) 2,057 Extractive Multi-document system summaries. 4) 20,291 Named Entity Recognised articles. 5) 20,291 Part of Speech Tagged articles. 6) 20,291 Morphologically Analyse articles. The data collection articles fall into six categories: culture, economy, local-news, international-news, religion, and sports. The process of creating KALIMAT was applied to the entire data collection (20,291 articles). -
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LTS: Learning to Search
Discriminative subgraph mining by learning from search history
LTS (Learning to Search) is an implementation of an algorithm described in "LTS: Discriminative Subgraph Mining by Learning from Search History" in Data Engineering (ICDE), IEEE 27th International Conference, pages 207-218, 2011. The purpose of LTS is to find discriminative subgraphs, which are smaller graphs that are embedded in larger graphs that all share a certain trait. A discriminative subgraph can help to characterize a complex graph and can be used to classify new graphs with unknown traits. ... -
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dbtesma
efficient data generation for benchmarks and performance analysis
Highly efficient Data Generator for Benchmarks and Algorithm Performance Analysis. Supports fully configurable schemata as well as meta structures like Foreign Keys and Functional Dependencies. -
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GenNon-h
Simulating non-homogeneous multiple sequence alignments
...On the other hand, methods of simulating the DNA MSA directly from the transition matrices do not exist. Moreover, existing software restricts to the time-reversible models and it is not optimized to generate nonhomogeneous data (i.e. placing distinct substitution rates at different lineages). GenNon-H is the first package designed to generate multiple sequence alignments under the discrete-time Markov processes on phylogenetic trees, which samples directly from the transition matrices. Based on the input model and a phylogenetic tree in the Newick format (with branch lengths measured as the expected number of substitutions per site), the algorithm produces DNA alignments of desired length. ... -
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A collection of classes and facilities targeted at any kind of communication / presentation, from user interfaces to information kiosks to data-mining.
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libfgen
Library for optimization using a genetic algorithm or particle swarms
libfgen is a library that implements an efficient and customizable genetic algorithm (GA). It also provides particle swarm optimization (PSO) functionality and an interface for real-valued function minimization or model fitting. It is written in C, but can also be compiled with a C++ compiler. Both Linux and Windows are supported. -
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qure
software for viral quasispecies reconstruction from next-gen seq. data
QuRe is a program for viral quasispecies reconstruction, specifically developed to analyze long read (>100 bp) NGS data. The software performs alignments of sequence fragments against a reference genome, finds an optimal division of the genome into sliding windows based on coverage and diversity and attempts to reconstruct all the individual sequences of the viral quasispecies--along with their prevalence--using a heuristic algorithm, which matches multinomial distributions of distinct viral variants overlapping across the genome division. ... -
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Hasher
A hash ecryption program with many customizations
This program is focused on making the cracking process of the encrypted data an easy task for the intended receiver of the message. The program lets you create encrypted data out of your text input. It supports many different algorithms, and uses windows 1250 character map, so it supports lots of special characters properly. It was designed to be able to handle long texts if needed, it separates the input to words at spaces. -
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Collection of Delphi / FreePascal code units. Includes libraries for Unicode, Strings, Data Structures, Sockets and Mathematics.
