Search Results for "r package xmsannotator" - Page 4
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Showing 261 open source projects for "r package xmsannotator"
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Strategems
Quantitative systematic trading strategy development and backtesting
Strategems is a Julia package aimed at simplifying and streamlining the process of developing, testing, and optimizing algorithmic/systematic trading strategies. This package is inspired in large part by the quantstrat1,2 package in R, adopting a similar general structure to the building blocks that make up a strategy. Given the highly iterative nature of event-driven trading strategy development, Julia's high-performance design (particularly in the context of loops) and straightforward syntax... -
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R-package of "Local Pooled Error" (LPE) Analysis for analyzing Gene expression (Microarray) data for small number of replicates
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gostsum for Windows
OpenSSL utility to compute GOST/Streebog hashes
This package contain utilities to compute GOST hashsums: gostsum - computes GOST R 34.11-94 hash. gost12sum - computes GOST R 34.11-2012 hash. Written by Cryptocom LTD. See also: https://sourceforge.net/projects/openssl-for-windows/ Visit: http://albanese.atwebpages.com -
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Harmony Data Integration
Fast, sensitive and accurate integration of single-cell data
Harmony is a general-purpose R package with an efficient algorithm for integrating multiple data sets. It is especially useful for large single-cell datasets such as single-cell RNA-seq. Harmony has been tested on R versions =4. Please consult the DESCRIPTION file for more details on required R packages. Harmony has been tested on Linux, OS X, and Windows platforms. -
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FRUITS
Food Reconstruction Using Isotopic Transferred Signals
Description IMPORTANT NOTICE: The current release of FRUITS (FRUITS 3.1) will be the last as a Windows installer. This version is the closest to the soon to be released R-based ReSources package as part of the IsoMemo initiative. FRUITS is a Bayesian mixing model for diet reconstruction using isotopic data. -
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GDINA Package for Cognitively Diagnostic
Package for Cognitively Diagnostic Analyses
Estimating G-DINA model and a variety of widely-used models subsumed by the G-DINA model, including the DINA model, DINO model, additive-CDM (A-CDM), linear logistic model (LLM), reduced reparametrized unified model (RRUM), multiple-strategy DINA model for dichotomous responses. Estimating models within the G-DINA model framework using user-specified design matrix and link functions. Estimating Bugs-DINA, DINO and G-DINA models for dichotomous responses. Estimating sequential G-DINA model... -
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spatialct
R package for measuring spatial concentration
R package for measuring spatial concentration according to the transportation problem approach by Ferrante et al. (2019). -
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posterdown
Use RMarkdown to generate PDF Conference Posters via HTML
Welcome to Posterdown! This is my attempt to provide a semi-smooth workflow for those who wish to take their RMarkdown skills to the conference world. Many creature comforts from RMarkdown are available in this package such as Markdown section notation, figure captioning, and even citations like this one (Allaire, Xie, McPherson, et al. 2018). The rest of this example poster will show how you can insert typical conference poster features into your own document. Posterdown was created as a proof... -
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MoPAC
The Modular Pipeline for the Analysis of CRISPR screens
To facilitate the comparison of gene essentialities in two or more cell samples, we propose MoPAC (Modular Pipeline for Analysis of CRISPR screens), a Shiny-driven interactive tool for differential essentiality analysis in CRISPR/Cas9 screens. For installation and usage instructions please refer to the wiki page. -
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rpackage conjurer
Synthetic data generation using R
Builds synthetic data applicable across multiple domains. This package also provides flexibility to control data distribution to make it relevant to many industry examples. -
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Open Intro Statistics
An open-source textbook written at the college level
... the "openintro" R package that is available from GitHub (https://github.com/OpenIntroOrg) if you would like to regenerate a figure. Other packages may also occasionally be required. -
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xMSanalyzer
An R package for metabolomics data extraction and quality assessment
xMSanalyzer comprises of utilities that can be classified into four main modules: 1) merging apLCMS or XCMS sample processing results from multiple sets of parameter settings, 2) evaluation of sample quality, feature consistency, and batch-effect, 3) feature matching, and 4) characterization of m/z using KEGG REST; 5) Batch-effect correction using ComBat -
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HaDeX
Tools for processing, analysis and visualization of HDX-MS experiments
Tools for processing, analysis and visualization of Hydrogen Deuterium eXchange monitored by Mass Spectrometry experiments (HDX-MS). HaDeX introduces a new standardized and reproducible workflow for the analysis of the HDX-MS data, including novel uncertainty intervals. Additionally, it covers data exploration, quality control and generation of publication-quality figures. All functionalities are also available in the HaDeX web server (http://mslab-ibb.pl/shiny/HaDeX/) or the HaDeX R package. -
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MANTIS R Package
Multi-locus ANTIgenic Simulator R-package for multi-strain pathogens
This repository contains the most updated code version of MANTIS, the Multi-locus ANTIgenic Simulator R-package. MANTIS is developed and maintained by the Evolutionary Ecology of Infectious Disease (EEID) research group at the Department of Zoology, University of Oxford, UK. For theoretical background please refer to 'MANTIS: an R package that simulates multilocus models of pathogen evolution' (https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-015-0598-9 OPEN ACCESS... -
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NanoR
R package built to analyze and compare Nanopore data
NanoR is a package for the statistical language and environment R, tested on Unix, MacOSX and Windows, that allows user-friendly analysis and comparison of 1D MinION and GridION X5 sequencing data within acceptable time frames. -
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HBV interventions model
ODE HBV model and MCMC for fitting HBsAg, HBcAg and HBeAg data.
This code implements the MCMC and ordinary differential equation (ODE) model described in [1]. The core MCMC and ODE code is implemented in C/C++, and is wrapped with an R front end. This is not an R-package (although there are plans to extend the code and eventually make it into an R-package). Please read the PDF file supplied for further instructions on how to use this code. [1] HBV vaccination and PMTCT as elimination tools in the presence of HIV: insights from a clinical cohort... -
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bookdownplus
Use R package bookdown for writing varied types of books and documents
The package bookdownplus (Zhao 2017a) is an extension of R bookdown (Xie 2016). It is a collection of multiple templates on the basis of LaTeX, which is tailored so that I can work happily under the umbrella of bookdown. bookdownplus helps you write academic journal articles, guitar books, chemical equations, mails, calendars, and diaries. bookdown features the collaboration of many fantastic tools. However, an R beginner might be confused or depressed in struggling in the flood of LaTeX, YAML... -
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lmSupport
R package to support linear models and related analyses
R package to support linear models and related analyses. Package also supports Brauer/Curtin graduate course series on the linear model -
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reacto
A sweet IDE for React.js
Interact with your code: use bricks to play with props, imports or quickly change a component type. Package Manager out of the box: add, upgrade, delete and search dependencies in a flash. Smart and fast autocomplete: automatically find relative path to any file, quick snippets and more to come. Preview components, quickly: press Cmd+R to toggle the component previewer. That's it. Reacto is available for Mac, Windows, and Linux. It can be downloaded from the releases page. There is absolutely... -
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IMG4DC – Dreamcast Selfboot Toolkit
Generate ready-to-use disc images for your Sega Dreamcast system !
IMG4DC is a tools package containing two utilities to generate selfboot disc images for your Sega Dreamcast: cdi4dc, designed to make Padus DiscJuggler (CDI) images and mds4dc, designed to make Alcohol 120% (MDS/MDF) images. A selfboot image is a disc image format specially prepared to boot on your Dreamcast. In clear, by burning a selfboot image to a standard blank CD-R, the software containted into this disc image will run onto your Dreamcast, as a legit game disc, without any modchip... -
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An R package for metrology. metRology provides classes and calculation and plotting functions for metrology applications, including measurement uncertainty estimation and (eventually) inter-laboratory metrology comparison studies.
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octave-intinf
Infinite-precision integer arithmetic for Octave, written in Octave
... % Exponentiation, division >> f == -b % Logical operators >> [q, r] = intinf_divide (b^2, a) % Divsion and remainder >> x = intinf_rand (100) % Random number (here, with 100 digits) TODO: * Better errors. * Make a package loadable by octave's pkg function. -
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Grinn
graph database and R package for omic data integration
http://kwanjeeraw.github.io/grinn/ -
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JDistlib
Java library of statistical distribution
A Java package that provides routines for various statistical distributions. Based on R version 2.14.1 (continuously updated; current as of R v3.3.0). The major difference is that JDistlib is thread safe. The library contains the density (pdf), cumulative (cdf), quantile, and random number generator (RNG) routines of the following distributions: Ansari, Beta, Binomial, Cauchy, Chi square, Exponential, Fisher's F, Gamma, Geometric, Hypergeometric, Kendall, Logistic, Log normal, Negative binomial...