Search Results for "genetic" - Page 4
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Showing 721 open source projects for "genetic"
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Repfabric is a customer relationship management (CRM) software designed specifically for multi-line sales teams (i.e. reps, distributors, wholesalers, dealers, and manufacturers). It streamlines and simplifies the sales process by providing deep integration with email, contacts, calendars, and deal tracking. The platform enables users to track commissions from CRM to sale, make updates directly from mobile devices, and document sales calls using voice-to-text features.
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wgssat_nbfgr
WGSSAT: SSR Annotation Pipeline
... in various genomic regions and will also facilitate the development of markers for genetic analysis and related applications, such as marker-assisted breeding and linkage mapping. -
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This project is the cvs-home of very different projects. Look in the Forum to view short descriptions. Most recent (and actual) is "geneden", a genetic IA app with Swing GUI and...
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MimicrEE (Mimicing Experimental Evolution) is a tool for forward simulations of entire genomes. It basically allowes to simulate adaptation from standing genetic variation, thus no 'de novo' mutations are supported. It has been tested with 8,000 individulas having 2,000,000 million SNPs. Documentation: https://sourceforge.net/p/mimicree/wiki/Main/
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Ub_ISAP
A streamlined UNIX pipeline for mining unique viral vector integration
Background: The analysis of viral vector genomic integration sites is an important component in assessing the safety and efficiency of patient treatment using gene therapy. Alongside this clinical application, integration site identification is a key step in the genetic mapping of viral elements in mutagenesis screens that aim to elucidate gene function. We have developed a UNIX-based vector integration site analysis pipeline (Ub-ISAP) that utilises a UNIX-based workflow for automated... -
Take away the pain and hassle associated with applicant recruitment, hiring, and onboarding with ApplicantStack. Designed for HR professionals and recruiters, ApplicantStack helps streamline the recruiting and onboarding processes to improve productivity and reduce costs. ApplicantStack provides a complete toolkit that includes tools for posting, launching, and advertising jobs, assessing and managing candidates, collaborating with teams, centralizing information for quick hiring and onboarding, and more.
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diauxic growth model ensemble
An ensemble of models showing diauxic growth behavior
... be categorized according to regulatory, stoichiometric, and physiological constraints and differ from each other on only a single aspect. We distinguish four groups of models: (1) flux balance models that only define reaction kinetics for substrate uptake and by-product excretion, (2) kinetic models without and (3) kinetic models with regulation on the metabolic and/or genetic level, and (4) resource allocation models. -
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spectralHMM
A spectral method for inferring selection from time series data
***WARNING*** This software was migrated to: https://github.com/popgenmethods/spectralHMM Support and updates will only be available at this new address. This software implements the algorithms described in the following paper: Steinrücken, M., Bhaskar, A. and Song, Y.S. A novel spectral method for inferring general diploid selection from time series genetic data. Annals of Applied Statistics, Vol. 8, No. 4 (2014) 2203-2222 -
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GenCodeGenerator
C++ class to generate biologically plausible genetic codes
The "GeneticCode" C++ class is designed to generate versions of the genetic code subject to the requirements of the three major models of the genetic code origin and evolution (about these models see, e.g., Koonin & Novozhilov, 2009, IUBMB Life). This class was written specifically to perform statistical test for the paper Makukov & shCherbak (2017), but it might be used for a wider class of studies related to the genetic code. By default, the class "GeneticCode" generates alternative... -
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Jade
Evolutionary Algorithms for Time-Dependent Optimization & Learning
A Java library of Genetic Algorithms, Artificial Immune Systems and Pittsburgh Classifier Systems meant to operate in time-dependent environments. -
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GA-tools
general genetic algorithms optimization fortran 95 routines
High level optimization routines in Fortran 95 for optimization problems using a genetic algorithm with elitism, steady-state-reproduction, dynamic operator scoring by merit, no-duplicates-in-population. Chromosome representation may be integer-array, real-array, permutation-array, character-array. Single objective and multi-objective maximization routines are present. Possible to incorporate own crossover and mutation operators exclusively or in addition to standard operators that are included... -
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jMetal is an object-oriented Java-based framework for solving multi-objective optimization problems with metaheuristics.
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GAKNN is a data mining software for gene annotation data. GAKNN is built with k- Nearest Neighbour algorithm optimized by the genetic algorithm. Gene annotation datasets saved under .csv or .arff formats with Gene Ontology or FunCat categorization can use GAKNN to predict gene functions.
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Gene-Environment iNteraction Simulator 2
A tool able to simulate gene-environment and gene-gene interactions.
Gene-Environment iNteraction Simulator 2 (GENS2) simulates interactions among two genetic and one environmental factor and also allows for epistatic interactions. GENS2 is based on data with realistic patterns of linkage disequilibrium, and imposes no limitations either on the number of individuals to be simulated or on number of non-predisposing genetic/environmental factors to be considered. The GENS2 tool is able to simulate gene-environment and gene-gene interactions. To make the Simulator... -
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Integrated Merging of Orthogonal [Genetic] Datasets to identify novel genes involved in processes starting with known genes. For UNIX-like systems (C code + TCSH scripts), command-line based.
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hadiproject
The following program measures the percentage similarity of protein se
This program is a multiple sequence comparison program for proteins. Scientists have pursued comparing sequences of proteins because it allowed them to have structural evidence of the species’ physical features without even having to look at the species, just by using the genetic sequence of their proteins. Comparing sequences also helps hypothesize the future for any evolutionary changes a certain species can go through based on its protein sequence compared to animals of the same species. -
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Genetic Evolution Project
Evolution with Genetic algorithms
This project is meant to simulate Evolution using genetic algorithms and unity engine. -
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Genetic Programming Classifier is a distributed evolutionary data classification program. It uses the ensemble method implemented under a parallel co-evolutionary Genetic Programming technique.
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MicroGP
A multi-purpose extensible self-adaptive evolutionary algorithm
MicroGP (µGP, ugp) is a versatile optimizer able to outperform both human experts and conventional heuristics in finding the optimal solution of hard problems. It is an evolutionary algorithm since it mimics some principles of the Neo-Darwinian paradigm. ⚠️ A new version is available on https://github.com/squillero/microgp4 -
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Interactive graphics software for Cellular Automata, Random Boolean Networks, and multi-value Discrete Dynamical Networks -- space-time patterns and basins of attraction -- to study emergence, complexity, neural and genetic networks. www.ddlab.org
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MK.P-gp.substrate
Tho role of P-glycoprotein in the transport of MK-467
MK-467 is a peripheral α2-adrenoceptor antagonist. It counteracts the cardiovascular and endocrine effects of the α2-adrenoceptor agonist dexmedetomidine. P-glycoprotein (P-gp) is an efflux transporter present within the blood-brain barrier. Genetic abnormalities in P-gp function may increase permeability to certain drugs increasing their concentration in brain. The aim of this in vitro study was to determine whether MK-467 is a substrate of P-gp. MK-467 transport was studied using. Madin... -
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Opt4J
Modular Java framework for meta-heuristic optimization
Opt4J is an open source Java-based framework for evolutionary computation. It contains a set of (multi-objective) optimization algorithms such as evolutionary algorithms (including SPEA2 and NSGA2), differential evolution, particle swarm optimization, and simulated annealing. The benchmarks that are included comprise ZDT, DTLZ, WFG, and the knapsack problem. The goal of Opt4J is to simplify the evolutionary optimization of user-defined problems as well as the implementation of arbitrary... -
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tsp-problem-ga-aco-comparisson
Genetic Algorithm and Ant Colony to solve the TSP problem
This project compares the classical implementation of Genetic Algorithm and Ant Colony Optimization, to solve a TSP problem. It's possible to define the number of cities to visit , and also interactively create new cities to visit in a 2D spatial panel. A total distance is given for AG and ACO solution at end. -
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Transcriptome of Galaxea fascicularis
Metatranscriptome Analyses of Galaxea fascicularis
Metatranscriptome Analyses of Galaxea fascicularis Reveal Local Adaptation in Coral and Symbiodinium Symbiosis Zhenyue Lin1,2 ξφ, Mingliang Chen2 ξ, Xu Dong2, Jianming Chen2 φ, XunXu1,2 1 School of Life Sciences, Xiamen University, Xiamen, Fujian 361105, China 2 State Key Laboratory Breeding Base of Marine Genetic Resources; Key Laboratory of Marine Genetic Resources, The Third Institute of State Oceanic Administration; Key Laboratory of Marine Genetic Resources of Fujian Province, Xiamen... -
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Logi (Local Observations to Global Integration) transforms several local coordinate systems (composed of polar measurements) into a global spatial uniform network with respect to the Guide to the Expression of Uncertainty in Measurement (GUM).
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Sched-Resched
A C++ schedule generator based on Genetic Algorithm and Hill Climbing
Sched-Sched is a C++ schedule generator for software project staffing and rescheduling based on Genetic Algorithm (GA) and Hill Climbing (HC). It is implemented with GALib (http://lancet.mit.edu/ga/), an open-source toolkit of Genetic Algorithms in various platforms including Unix and Windows. The input and output files of the software are required as XML format. The input file includes tasks' and employees' information according to predefined file format. The generated output XML file... -
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Sched-SPM
A C++ schedule generator based on Genetic Algorithm and Hill Climbing
Sched-SPM is a C++ schedule generator for software project staffing and rescheduling based on Genetic Algorithm (GA) and Hill Climbing (HC). This preliminary tool is mainly for academic purpose. It is implemented with GALib (http://lancet.mit.edu/ga/), an open-source toolkit of Genetic Algorithms in various platforms including Unix and Windows. The input and output files of the software are required as XML format. The input file includes tasks' and employees' information according...