Jade

Evolutionary Algorithms for Time-Dependent Optimization & Learning

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Last Update: 2017-05-31

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A Java library of Genetic Algorithms, Artificial Immune Systems and Pittsburgh Classifier Systems meant to operate in time-dependent environments.

Features

YASAIS - Yet Another Simple Artificial Immune System
PICS - Pittsburgh-style Immune Classifier System
Time Dependent Optimization Fitness Functions

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2011-04-14

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The RDP Classifier is a naive Bayesian classifier that can rapidly and accurately provides taxonomic assignments for bacterial and archaeal 16S rRNA sequences, fungal LSU and fungal ITS sequences, with confidence estimates for each assignment. More information and tutorials on how to install, use and retrain RDP Clasifier can be found on at https://github.com/rdpstaff/classifier and John Quensen's blog (https://john-quensen.com/). Citation: 1. Wang Q, Garrity GM, Tiedje JM, Cole JR. Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Appl Environ Microbiol. 2007 Aug;73(16):5261-7. 2. Wang Q, Cole JR. Updated RDP taxonomy and RDP Classifier for more accurate taxonomic classification. Microbiol Resour Announc. 2024 Apr 11;13(4):e0106323.
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