Search Results for "classification" - Page 20
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Showing 774 open source projects for "classification"
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GTkNN
GPU-based Textual kNN (GT-kNN)
The following code is a parallel kNN implementation that uses GPUs for the high dimensional data in text classification. You can use it to classify documents using kNN or to generate meta-features based on the distances between a query document and its k nearest neigbors -
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SpliceJumper
A tool for splicing junction calling from RNA-Seq data
SpliceJumper is classification based splicing junction calling tool. For now, it accepts paired-end RNA-Seq reads as input, and calls out the junctions. Also do the alignment. -
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DynaSys
An easy-to-use dynamical systems modeler with great visualizations.
...Examine a single path or an entire vector field. Change parameters and watch the effects in real time. Load and save models and data. Enter nullclines and Jacobians identification and classification of equilibria. Auto-generate fast C implementations of your model and fit them to data using Matlab, with optional GPU support. The long-term goal is to incorporate this into software that simulates whole neural networks. Note: This is a beta version, and there is currently no user's manual. Additional developers welcome. ... -
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...The prediction of protein"hubs" was done using physiochemical, thermodynamic and conformational properties of amino acid residues from amino acid sequence. Our prediction results show that meaningful amino acid features can produce signature features for differentiating hubs from non-hubs. The classical classification method, Support Vector Machines (SVM), is used to develop a tool to discriminate between hub and non hub proteins. Funding from Department of Information Technology,Govt. of India, (DIT/R&D/B10/15(23)2008, dated 07/09/2010), is acknowledged.
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CalcMatr
Calculations with matrixes of integers or fractions up to 4 x 5
...Combined operations among matrixes: addition, subtraction, product, raising to a power Systems of equations up to 4 equations with 4 unknowns, also introduced by the user or generated by the app: it makes the classification of the system and the resolution in consistent systems. -
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ProClaT
Protein Classifier Tool
ProClaT (Protein Classifier Tool) is a new bioinformatic machine learning approach for in silico protein classification. ProClaT uses the Multilayer Perceptron Neural Network (MLPNN) as the classifier algorithm, protein sequence to compose the features and protein conserved patterns to label the class. -
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Collective Mind Technology
plugin-based framework for systematic and reproducible experimentation
...cM uses crowdsourcing to leverage knowledge and computational resources of multiple users. For example, it includes multi-objective GCC, LLVM and ICC auto-tuning scenarios using shared benchmarks, codelets, data sets, tools, and combined with classification and predictive models. cM includes OpenME interactive interface to open up and expose internals of various third-party tools such as GCC, LLVM, run-time systems, etc. and connect them to cM through dynamic plugins that allows online analysis and tuning of programs and architectures. Live repo: http://c-mind.org/repo -
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The JINSECT toolkit is a Java-based toolkit and library that supports and demonstrates the use of n-gram graphs within Natural Language Processing applications, ranging from summarization and summary evaluation to text classification and indexing.
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This application assists in generating pre-compositional material based on a computational interpretation of the 'Schillinger System of Musical Composition' (Schillinger 1946).
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...The FOSSology Project is a Free Open Source Software (FOSS) project built around an open and modular architecture for analyzing software for open source software governance. Existing modules include license scanning, copyright and user identification, license classification and meta data extraction.
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VADER
Lexicon and rule-based sentiment analysis tool
VADER (Valence Aware Dictionary and sEntiment Reasoner) is a lexicon and rule-based sentiment analysis tool designed for analyzing the sentiment of text, particularly in social media and short text formats. It is optimized for quick and accurate analysis of positive, negative, and neutral sentiments. -
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Koppen Climate Classifier
A Classifer for Koppen Climate Classification System
The Koppen Climate Classifier is an open source software written in Java that classifies regional climate based on Koppen Climate Classification System. It classifies climate based on three types of inputs: temperature, precipitation and hemisphere. The Koppen Climate Classification is one of the most widely used climate classification systems. It was first published by a Russian German climatologist, Wladimir Koppen. This system is based on the concept that native vegetation is the best expression of climate. -
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Clustering Variation looks for a good subset of attributes in order to improve the classification accuracy of supervised learning techniques in classification problems with a huge number of attributes involved. It first creates a ranking of attributes based on the Variation value, then divide into two groups, last using Verification method to select the best group.
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MODLEM
rule-based, WEKA compatible, Machine Learning algorithm
...This algorithm contains some aspects of Rough Set Theory: the class definition can be described accordingly to its lower or upper approximation. For more information, see: Stefanowski, Jerzy. The rough set based rule induction technique for classification problems. In: Proc. 6th European Congress on Intelligent Techniques and Soft Computing, vol. 1. Aachen, 1998. s. 109-113. -
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Fuzzy clustering variation looks for a good subset of attributes in order to improve the classification accuracy of supervised learning techniques in classification problems with a huge number of attributes involved. It first creates a ranking of attributes based on the Variation value, then divide into two groups, last using Verification method to select the best group.Simon Fong, Justin Liang, YanZhuang, "Improving Classification Accuracy Using Fuzzy Clustering Coefficients of Variations (FCCV) Feature Selection Algorithm", 2014 IEEE 15th International Symposium on Computational Intelligence and Informatics (CINTI), pp.147-151
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libVMR
VMR - machine learning library
...libVMR is based on the most popular neural network model with a higher generalization ability from kernel tricks - vector machine by Reshetov (VMR). The library has been designed to learn from data sets. Typical applications here are pattern recognition ( binary classification). -
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TUIT
Taxonomic Unit Identification Tool
...Read our paper in Biotechniques: http://www.ncbi.nlm.nih.gov/pubmed/24502797 Taxonomic Unit Identification Tool (TUIT) is a free open source platform-independent software, designed specifically to facilitate taxonomic annotation of nucleotide sequences via BLAST homology search against the NCBI databases. TUIT is immediately applicable for both to 16S microboime studies as well as for taxonomic classification of the nucleotide reads. Please see the project's Wiki page. -
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The SPARE library (Something for PAttern REcognition) is a set of C++ (template) classes that offer some building blocks useful to build software modules for complex Pattern Recognition tasks, as: Classification, Clustering, Function Approximation.
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ConvNetJS
Deep learning in Javascript to train convolutional neural networks
...ConvNetJS is an implementation of Neural networks, together with nice browser-based demos. It currently supports common Neural Network modules (fully connected layers, non-linearities), classification (SVM/Softmax) and Regression (L2) cost functions, ability to specify and train Convolutional Networks that process images, and experimental Reinforcement Learning modules, based on Deep Q Learning. The library allows you to formulate and solve Neural Networks in Javascript. If you would like to add features to the library, you will have to change the code in src/ and then compile the library into the build/ directory. ... -
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GoIFISH
for the semi-automated analysis of IFISH images
GoIFISH has been developed for the analysis of IFISH (Immunofluorescence + Fluorescence in situ Hybridisation) images, performing nuclear, membrane and spot detection. Users can manually edit segmentation results, perform background adjustments, construct heatmaps, topology maps, and perform cell classification. All results can be exported for further analysis. GoIFISH has been developed in MATLAB, however binaries are provided to run the program outside of the MATLAB environment. Source code is also available for download. To cite this software: "GoIFISH: A system for the quantification of single cell heterogeneity from IFISH images" Trinh A, Rye IH, Almendro V, Helland A, Russness HG, Markowetz F May 2014 -
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Persica-A new Persian corpus for NLP
This project presents a new corpus for NEWS text analysis in Persian
Lack of multi-application text corpus despite of the surging text data is a serious bottleneck in the text mining and natural language processing especially in Persian language. This project presents a new corpus for NEWS articles analysis in Persian called Persica. NEWS analysis includes NEWS classification, topic discovery and classification, category classification and many more procedures. Dealing with NEWS has special requirements and first of all a valid and reliable corpus to perform the experiments on them. Please use this reference to cite us: @inproceedings{eghbalzadeh2012persica, title={Persica: A Persian corpus for multi-purpose text mining and Natural language processing}, author={Eghbalzadeh, Hamid and Hosseini, Behrooz and Khadivi, Shahram and Khodabakhsh, Ali}, booktitle={Telecommunications (IST), 2012 Sixth International Symposium on}, pages={1207--1214}, year={2012}, organization={IEEE} } -
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CURRENNT
CUDA-enabled machine learning library for recurrent neural networks
CURRENNT is a machine learning library for Recurrent Neural Networks (RNNs) which uses NVIDIA graphics cards to accelerate the computations. The library implements uni- and bidirectional Long Short-Term Memory (LSTM) architectures and supports deep networks as well as very large data sets that do not fit into main memory. -
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GeCCO (Genomic CNV Classification Objectively) is a bioinformatics tool for classifying copy number variants as either benign or pathogenic.
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CS Miner
A tool for Navigating in Chemical Space
CS-Miner stands for Chemical Space Miner and is a software tool for navigating in chemical space of compound databases. It helps for deriving appropriate classification models and performing virtual screening. Download it via: http://csminer.com/csm/?p=7 A quick tutorial is available through: http://csminer.com/csm/?p=8
