Search Results for "soapdenovo-trans" - Page 2
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Showing 88 open source projects for "soapdenovo-trans"
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Managing your therapy and rehab practice is a time-consuming process. You spend hours on paperwork, billing, scheduling, and more. Raintree’s Therapy & Rehab EHR is here to help you manage your practice more efficiently. With our all-in-one solution, you’ll get the tools you need to streamline your therapy and rehab practice, improve patient care, and get back to doing what you love.
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ConnectWise SIEM (formerly Perch) offers threat detection and response backed by an in-house Security Operations Center (SOC). Defend against business email compromise, account takeovers, and see beyond your network traffic. Our team of threat analysts does all the tedium for you, eliminating the noise and sending only identified and verified treats to action on. Built with multi-tenancy, ConnectWise SIEM helps you keep clients safe with the best threat intel on the market.
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LOOPERS, MMM ,TWINKAS P2P SCRIPTS
Buy MMM Script 2017
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eurotrack
SD-Trans client application
SD-Trans client application is a client software built for SD-Trans company to make the possibility to connect to their system from desktop. -
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SoundExplorer
Trans wav to C file or create a wav
This project is used to analyse a wav file and export sound's sample data to a C source file and header file which can be used to compile directly. Also, This project can organize code in some way. But didn't provide graphic views of .wav file, this may be complete in the future. Currently, I develop it myself in my part-time, and I find it's a hard to develop it just with myself. I hope if you see this project and also want to join in develop it, please let me know. -
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ROP : Read origin protocol
ROP is a computational protocol to discover the source of all reads
ROP is a computational protocol aimed to discover the source of all reads, which originate from complex RNA molecules, recombinant antibodies and microbial communities. The ROP accounts for 98.8% of all reads across poly(A) and ribo-depletion protocols, compared to 83.8% by conventional reference-based protocols. ROP profiles repeats, circRNAs, gene fusions, trans-splicing events, recombined B/T-cell receptor sequences and microbial communities. The ‘dumpster diving’ profile of unmapped reads... -
Deliver a personalized customer experience with every interaction, across every channel, with uContact, net2phone’s cloud contact center solution.
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PExFInS
Post-GWAS Explorer for Functional Indels and SNPs
The generation of Post-GWAS Explorer for Functional Indels and SNPs (PExFInS) was originated from the observation that high proportion of cis-acting expression quantiative trait loci (cis-eQTLs) emerged in GWAS SNPs and the underexplored status of indel cis-eQTLs for GWAS. We believe that the integration of cis-eQTLs, especially indel cis-eQTLs, with candidate disease-associated variants generated from GWAS could facilitate the identification of causal genes or disease mechanisms. On the... -
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A tool for extracting and preprocessing spectral count data for label-free quantitative proteomic analysis. This program is designed to be used with the Trans-Proteomic Pipeline (TPP).
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iCAS - An Illumina Clone Assembly System
An Illumina clone assembly system using SOAPdenovo and ABySS
Clone-by-clone sequencing, as a means of achieving high quality assemblies for large and complex genomes, continues to be of great relevance in the era of high throughput sequencing. However, assemblies obtained using current whole genome assemblers are often fragmented and sometimes have issues of genome completeness owing to different data characteristics introduced by multiplexed sequencing. With iCAS the data filtering process is based on a novel kmer frequency algorithm, resulting... -
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View Controller Transitions Library
Collection of iOS7 animation controllers and interaction controllers
View Controller Transitions Library is a collection of iOS7 animation controllers and interaction controllers, providing flip, fold and all kinds of other transitions. With iOS 7 you can easily create custom view controller transitions that can be used in a range of contexts (push, pop, modal, etc.) This project provides a library of custom animations which can be dropped directly into your project. It also has a number of 'interaction controllers' which can be used with any of the custom... -
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Out-of-the-box scripts. Around-the-clock monitoring. Unmatched automation capabilities. Start doing more with less and exceed service delivery expectations.
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SOAPdenovo2
Large-size genome de-novo assembler
What's next of SOAPdenovo2: MEGAHIT is the formal successor of SOAPdenovo2 MEGAHIT: An ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph http://www.ncbi.nlm.nih.gov/pubmed/25609793 https://github.com/voutcn/megahit Latest Code on GitHub: https://github.com/aquaskyline/SOAPdenovo2 SOAPdenovo is a novel short-read assembly method that can build a de novo draft assembly for human-sized genomes. The program is specially designed... -
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Portuguese translation project for the Wesnoth game. This project aims to provide the translation of Wesnoth content and interface.
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AMD_HealthSocialCareSim
Multi-paradigm simulation of health and social care for AMD sufferers
... library, and an example of other software-engineering-best-practice ways to structure simulation models (which are covered in the journal paper "Simulation Design: Trans-Paradigm Best-Practice from Software Engineering" which introduces JSIT). It is released under the LGPL license. -
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Automated Proteomics Pipeline
A front end for several popular open source proteomics tools
APP automates and allows distributed computing of common proteomics tasks using a java-front end to provide both GUI and server parts. It is highly recommended for use with the Trans Proteomic Pipeline but this is not a requirement. -
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mitoMaker
mitoMaker - a mitochondria assembly and annotation script
mitoMaker is a pipeline script developed to simplify the assembly and automatic annotation of mitochondrial genomes, based on raw NGS reads and an optional target reference. mitoMaker calls well known assemblers and algorithms, such as SOAPdenovo, MIRA and blast+ and parses their results providing easily readable outputs, such as FASTA, GENBANK, SEQUIN, PNG and others. General pipeline: 1-iterative De Novo assembly, with different k-mer values, trying to assemble a build that matches... -
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mitoMaker
mitoMaker - a mitochondria pipeline wrapper script
... pipeline started to appear: assemble reads with MIRA or SOAPdenovo-Trans, look for a scaffold/contig that matches a closely-related species, check it to see if all expected genomic features are present (since mitochondria is well conserved), check to see if the assembly might have circularized (since it's a circular DNA). If a feature was missing, or it hasn't circularized, try and assemble again with different assembler parameters (mainly k-mer). Rinse and repeat until the best build is found. -
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pvaas
Program to identify Variants Associated with Aberrant Splicing
Alternative splicing is a precisely regulated process that involves interactions between cis- and trans-acting regulatory elements, and factors that disrupt these interactions can result in aberrant splicing. About 15-60% of human disease-causing mutations affect mRNA splicing rather than directly affecting coding sequences (López-Bigas, et al 2005, Krawczak M, et al, 1992). Deep transcriptome sequencing (RNA-seq) provides ability to interrogate both aberrant splicings and mutations... -
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"Translator Trans Writer" ("Translater Trans Writer") is a script for script writer. You write scripts that are used to write scripts. An English to C script is an example. It has a huge scope of usage, and more features planned. Check Out the Includ
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XièXiè Compiler
High-level, meta-language, trans-compiler with virutal machine
XièXiè is a language with a trans-compiler (or rather source-to-source compiler) which compiles to mainly C++ (C++98 and C++11). It also comes with an own assembler compiler for ARM, IA-32/ x86 and its own byte-code XBC (XièXiè-Byte-Code) including a virtual-machine. XièXiè can be seen as a "Meta Language". --- THIS PROJECT IS IN IT'S FIRST STEPS --- -
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luciphor
Calculates phospho-site localizations
Luciphor is a program that performs phospho-site localization on MS/MS data processed by the Trans-Proteomic Pipeline (TPP). It is the first phospho-site prediction program to provide estimates for the false localization rate (FLR). The program is multithreaded and written in C++ for linux. -
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"Translater Trans Writer" ("Translator Trans Writer") is a type of scripting program. NEW sourceforge LOCATION: https://sourceforge.net/projects/translatortrans
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PASHA: Parallelized Short Read Assembly
One of the fastest parallel short read assemblers for large genomes.
... compared to three leading assemblers: Velvet, ABySS and SOAPdenovo. Moreover, PASHA achieves the fastest speed for all three datasets on a single CPU. For the human genome, PASHA achieves competitive assembly quality with ABySS and is able to complete the assembly in about 21 hours, which is about 2.38× faster than ABySS on the same hardware configurations. -
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This is the code used in the experiments of the following paper: Xiaokui Xiao, Guozhang Wang, Johannes Gehrke: Differential Privacy via Wavelet Transforms. IEEE Trans. Knowl. Data Eng. 23(8): 1200-1214 (2011). Please cite the paper if you choose to use the code.
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dissect-trans
Dissect:A framework for Detection and Characterization of Novel Struct
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Nagios TCP Degradation Detection Plugin
Nagios TCP traffic degradation detection plugin from link utilization
...-utilization increases but starts to decrease when the link performance is degraded). Thus, it allows detecting TCP performance degradation perceived by the users before plateaus appear in occupancy graphs, with no active measures, nor fine grained or complex monitoring. [1] K. Ishibashi, R. Kawahara, T. Asaka, M. Aida, S. Ono, and S. Asano, “Detection of TCP Performance Degradation Using Link Utilization Statistics,” IEICE Trans. Comm., vol. E89-B, no. 1, pp. 47-56, Jan. 2006. -
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Syntax-translator
Small but nice syntax coloring PHP script
Allow me to introduce - SyntaxTranslator. This small script-pack allows you to print PHP and HTML code in better way than just plain text. With straight code and CSS styles SyntaxTranslator becomes easy-to-use and really flexible script ^_^