Showing 7 open source projects for "soapdenovo-trans"

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  • 1
    A.U.T.O is a web interface and control mechanism for transmission. It currently adds additional capabilities on top of the daemon, and is designed primarily for headless use. Check out the documentation in the hosted wiki above (coming soon) for a complete feature listing etc For release information etc, please see the news section above
    Downloads: 0 This Week
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  • 2
    The Sashimi project hosts the Trans-Proteomic Pipeline (TPP), a mature suite of tools for mass-spec (MS, MS/MS) based proteomics: statistical validation, quantitation, visualization, and converters from raw MS data to the open mzML/mzXML formats.
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    Downloads: 41 This Week
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  • 3
    GenSeed-HMM

    GenSeed-HMM

    Progressive assembly tool using DNA, protein or profile HMMs as seeds.

    ... The first seed is provided by the user, and can be a piece of DNA or protein sequence, or an HMM profile, for increased sensitivity. This program depends on BLAST+ or hmmsearch and a number of third-party support tools (EMBOSS' transeq and splitter, bowtie, 454's sfffile and sffinfo). Which tools will be mandatory depends on the kind of seed and assembler used. Assemblers currently supported include CAP3, Newbler, SOAPdenovo, Velvet, and Abyss.
    Downloads: 2 This Week
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  • 4

    iCAS - An Illumina Clone Assembly System

    An Illumina clone assembly system using SOAPdenovo and ABySS

    Clone-by-clone sequencing, as a means of achieving high quality assemblies for large and complex genomes, continues to be of great relevance in the era of high throughput sequencing. However, assemblies obtained using current whole genome assemblers are often fragmented and sometimes have issues of genome completeness owing to different data characteristics introduced by multiplexed sequencing. With iCAS the data filtering process is based on a novel kmer frequency algorithm, resulting...
    Downloads: 0 This Week
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  • 5
    The main aim of this project is to convert English text present in the web pages into Hindi,retaining the format of web page.The URL of the web page whose text it to be converted is fed as input and the translated page is displayed as output. A English t
    Downloads: 0 This Week
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  • 6
    This is the Palm Translation Utilities project, a set of perl and bash scripts used to make translating Palm programs that use PILRC easier. Software currently works, but may not handle edge cases correctly.
    Downloads: 0 This Week
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  • 7
    Linguistics tool, mainly for discourse analysis. Trans-Scribe will provide users with an interface for transcribing .wav audio speech files in any language and creating documents that display, publish, or export the waveform along with transcriptions.
    Downloads: 0 This Week
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