Showing 9 open source projects for "soapdenovo-trans"

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    WSJT

    WSJT

    Weak signal ham radio communication

    The WSJT project implements software for amateur radio communication using state-of-the-art digital techniques. Typical applications involve "DXing" at LF, MF, HF, and VHF+ frequencies, including meteor scatter and EME ("moonbounce"). Major emphasis is placed on weak-signal techniques. Summary Program Descriptions: WSJT-X supports the communication protocols FST4, FT4, FT8, JT4, JT9, JT65, Q65, MSK144, WSPR, FST4W, and Echo, each optimized for different sorts of radio-wave...
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    Downloads: 7,133 This Week
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  • 2
    The Sashimi project hosts the Trans-Proteomic Pipeline (TPP), a mature suite of tools for mass-spec (MS, MS/MS) based proteomics: statistical validation, quantitation, visualization, and converters from raw MS data to the open mzML/mzXML formats.
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    Downloads: 34 This Week
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  • 3

    LaSolv

    Solves symbolic electrical AC circuit equations

    In electrical engineering, AC circuits are often used in the design process. However, deriving the gain, input impedance or what have you is tedious and error prone. LaSolv takes a SPICE like description of your circuit and solves for whatever parameter you specify- voltage gain, trans-impedance, input impedance, etc.
    Downloads: 1 This Week
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  • 4
    mitoMaker

    mitoMaker

    mitoMaker - a mitochondria assembly and annotation script

    mitoMaker is a pipeline script developed to simplify the assembly and automatic annotation of mitochondrial genomes, based on raw NGS reads and an optional target reference. mitoMaker calls well known assemblers and algorithms, such as SOAPdenovo, MIRA and blast+ and parses their results providing easily readable outputs, such as FASTA, GENBANK, SEQUIN, PNG and others. General pipeline: 1-iterative De Novo assembly, with different k-mer values, trying to assemble a build that matches a target...
    Downloads: 2 This Week
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  • 5

    mitoMaker

    mitoMaker - a mitochondria pipeline wrapper script

    ... started to appear: assemble reads with MIRA or SOAPdenovo-Trans, look for a scaffold/contig that matches a closely-related species, check it to see if all expected genomic features are present (since mitochondria is well conserved), check to see if the assembly might have circularized (since it's a circular DNA). If a feature was missing, or it hasn't circularized, try and assemble again with different assembler parameters (mainly k-mer). Rinse and repeat until the best build is found.
    Downloads: 0 This Week
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  • 6
    Small command line utility to display gematria of hebrew/greek words
    Downloads: 0 This Week
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  • 7
    IM,WebIM and Sip voip tool. Client is Win32, Server is CentOS 5. support video,audio, file trans, sip call.
    Downloads: 0 This Week
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  • 8
    Frontend or sc_trans, written in wxPython, built in playlist editor, and transmit button to start streaming directly from the frontend. supports freebsd and macosx, send kill signals directly from the frontend too!
    Downloads: 0 This Week
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  • 9
    Momoko is a framework for developing distributed, multi-user, network-aware applications. It includes facilities for storing objects in a tree structure, a shell for manipulating the object database, orthogonal persistence, scripting support, and a trans
    Downloads: 0 This Week
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