Search Results for "multiple sequence alignment" - Page 2
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Showing 311 open source projects for "multiple sequence alignment"
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HunyuanVideo-Avatar
Tencent Hunyuan Multimodal diffusion transformer (MM-DiT) model
HunyuanVideo-Avatar is a multimodal diffusion transformer (MM-DiT) model by Tencent Hunyuan for animating static avatar images into dynamic, emotion-controllable, and multi-character dialogue videos, conditioned on audio. It addresses challenges of motion realism, identity consistency, and emotional alignment. Innovations include a character image injection module, an Audio Emotion Module for transferring emotion cues, and a Face-Aware Audio Adapter to isolate audio effects on faces, enabling multiple characters to be animated in a scene. Character image injection module for better consistency between training and inference conditioning. ... -
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Cpp17
Chinese translation of C++17 The Complete Guide
...It also covers enhancements to existing STL components, new library utilities, and advanced topics like polymorphic memory resources (PMR), alignment, and generic programming improvements. -
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Protenix
A trainable PyTorch reproduction of AlphaFold 3
Protenix is an open-source, trainable PyTorch reimplementation of AlphaFold 3, developed by ByteDance with the goal of democratizing high-accuracy protein structure prediction for computational biology and drug-discovery research. Protenix provides a complete pipeline for turning protein sequences (with optional MSA / sequence alignment) or structural inputs (e.g. PDB/CIF) into full 3D atomic-level structure predictions. It supports both “full” models and lightweight variants such as “Protenix-Mini,” offering a trade-off between speed/compute cost and predictive accuracy — making structure prediction accessible even in resource-constrained environments. ... -
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Automa
A chrome extension for automating your browser by connecting blocks
Automa is a browser extension for browser automation. From auto-fill forms, doing a repetitive task, taking a screenshot, to scraping data of the website, it's up to you what you want to do with this extension. Automa has provided various kinds of blocks that will help you do automation, and all you need to do is connect them. Want your workflow to run every day or every time you visit a specific website? You can set the workflow trigger on the trigger block. Try a workflow from the... -
Enterprise-grade ITSM, for every businessFreshservice is an intuitive, AI-powered platform that helps IT, operations, and business teams deliver exceptional service without the usual complexity. Automate repetitive tasks, resolve issues faster, and provide seamless support across the organization. From managing incidents and assets to driving smarter decisions, Freshservice makes it easy to stay efficient and scale with confidence.
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JavaCV
Java interface to OpenCV, FFmpeg, and more
JavaCV uses wrappers from the JavaCPP Presets of commonly used libraries by researchers in the field of computer vision (OpenCV, FFmpeg, libdc1394, FlyCapture, Spinnaker, OpenKinect, librealsense, CL PS3 Eye Driver, videoInput, ARToolKitPlus, flandmark, Leptonica, and Tesseract) and provides utility classes to make their functionality easier to use on the Java platform, including Android. JavaCV also comes with hardware accelerated full-screen image display (CanvasFrame and GLCanvasFrame), easy-to-use methods to execute code in parallel on multiple cores (Parallel), user-friendly geometric and color calibration of cameras and projectors (GeometricCalibrator, ProCamGeometricCalibrator, ProCamColorCalibrator), detection and matching of feature points (ObjectFinder), a set of classes that implement direct image alignment of projector-camera systems (mainly GNImageAligner, ProjectiveTransformer, ProjectiveColorTransformer, ProCamTransformer, and ReflectanceInitializer), and more. -
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frame.js
JavaScript Sequence Editor
frame.js is a tiny utility for orchestrating frame-based animations with requestAnimationFrame while keeping code clean and predictable. It abstracts the boilerplate of setting up a render loop, tracking elapsed time, and updating callbacks at the right cadence. By providing a simple lifecycle—start, stop, tick—it encourages separation between state updates and rendering, which is essential for smooth visuals. The library aims to be unobtrusive: you can drop it into demos or prototypes... -
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nanochat
The best ChatGPT that $100 can buy
nanochat is a from-scratch, end-to-end “mini ChatGPT” that shows the entire path from raw text to a chatty web app in one small, dependency-lean codebase. The repository stitches together every stage of the lifecycle: tokenizer training, pretraining a Transformer on a large web corpus, mid-training on dialogue and multiple-choice tasks, supervised fine-tuning, optional reinforcement learning for alignment, and finally efficient inference with caching. Its north star is approachability and speed: you can boot a fresh GPU box and drive the whole pipeline via a single script, producing a usable chat model in hours and a clear markdown report of what happened. ... -
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Task Scheduler
Cooperative multitasking for Arduino, ESPx, STM32, nRF and more
Cooperative multitasking for Arduino, ESPx, STM32 and other microcontrollers. A lightweight implementation of cooperative multitasking (task scheduling). An easier alternative to preemptive programming and frameworks like FreeRTOS. You mostly do not need to worry about pitfalls of concurrent processing (races, deadlocks, livelocks, resource sharing, etc.). The fact of cooperative processing takes care of such issues by design. -
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Fish Speech
SOTA Open Source TTS
...The repository hosts the code and tooling for training, fine-tuning, and serving high-quality TTS, while the current flagship models (OpenAudio-S1 and S1-mini) are distributed via Fish Audio’s playground and Hugging Face. The models are evaluated with Seed TTS metrics and achieve exceptionally low word and character error rates, indicating strong intelligibility and alignment between text and audio. Fish Speech emphasizes expressive and controllable voices: it supports a long list of emotion tags, tone markers, and special audio effect markers that can be embedded in the text to drive prosody and vocal style, from basic emotions to nuanced states like sarcastic, conciliative, or hysterical. The system is multilingual and cross-lingual, handling multiple languages in a single input without explicit phoneme markup, and is trained on large-scale datasets. -
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DreamO
A Unified Framework for Image Customization
DreamO is a unified, open-source framework from ByteDance for advanced image customization and generation that consolidates multiple “image manipulation” tasks into a single system, rather than requiring separate specialized models. Built on a diffusion-transformer (DiT) backbone, it supports a diverse set of tasks — including identity preservation, virtual “try-on” (e.g. clothing, accessories), style transfer, IP adaptation (objects/characters), and layout/condition-aware customizations —... -
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Qwen2.5-Math
A series of math-specific large language models of our Qwen2 series
Qwen2.5-Math is a series of mathematics-specialized large language models in the Qwen2 family, released by Alibaba’s QwenLM. It includes base models (1.5B / 7B / 72B parameters), instruction-tuned versions, and a reward model (RM) to improve alignment. Unlike its predecessor Qwen2-Math, Qwen2.5-Math supports both Chain-of-Thought (CoT) reasoning and Tool-Integrated Reasoning (TIR) for solving math problems, and works in both Chinese and English. It is optimized for solving mathematical... -
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UglifyJS 3
JavaScript parser, mangler, compressor, beautifier toolkit
UglifyJS is a JavaScript compressor/minifier written in JavaScript. It also contains tools that allow one to automate working with JavaScript code. A parser which produces an abstract syntax tree (AST) from JavaScript code. A code generator which outputs JavaScript code from an AST, also providing the option to get a source map. A compressor (optimizer). it uses the transformer API to optimize an AST into a smaller one. A mangler, reduce names of local variables to (usually) single-letters.... -
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Learn Claude Code
Bash is all you need, write a claude code with only 16 line code
Learn Claude Code is an educational repository that teaches how modern AI coding agents work by walking learners through a sequence of progressively more complex agent implementations, starting with a minimal Bash-based agent and culminating in agents with explicit planning, subagents, and skills. It emphasizes a hands-on learning path where each version (from v0 to v4) adds conceptual building blocks like the core agent loop, todo planning, task decomposition, and domain knowledge skills,... -
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lint-staged
Run linters on git staged files
Run linters against staged git files and don't let anything slip into your code base! Linting makes more sense when run before committing your code. By doing so you can ensure no errors go into the repository and enforce code style. But running a lint process on a whole project is slow, and linting results can be irrelevant. Ultimately you only want to lint files that will be committed. This project contains a script that will run arbitrary shell tasks with a list of staged files as an... -
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Underscore.js
JavaScript's utility belt
Underscore.js is a JavaScript utility-library created by Jeremy Ashkenas that provides a broad set of functions for working with arrays, objects, functions, and other data types — essentially a “utility belt” for functional programming in JS. Instead of extending built-in objects or modifying prototypes, Underscore provides its helpers in a single _ namespace, enabling cross-browser support and consistent behaviour across environments. It offers map/filter/reduce, deep-cloning, templating,... -
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Bert-VITS2
VITS2 backbone with multilingual-bert
...It provides emotional modeling through “emo embeddings,” allowing voices to be conditioned on different affective states during synthesis. Releases include optimizations for Japanese and English alignment, expanded training data, spec caching and pre-generation tools, as well as ONNX export for more lightweight inference deployments. -
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TreeScope
Use dynamic trees to increase interactability with sequence data.
> See TreeScope wiki: https://sourceforge.net/p/treescope/wiki/Home/ Related Software: 1. CStone: https://sourceforge.net/projects/cstone/ 2. CSReadGen: https://sourceforge.net/projects/csreadgen/ 3. CView: https://sourceforge.net/projects/cview/ 4. ChimSim: https://sourceforge.net/projects/chimsim/ 5. TVScript: https://sourceforge.net/projects/tvscript/ 6. SeQuester: https://sourceforge.net/projects/sequester/ 7. TreeScope. (See wiki) -
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Step-Audio-EditX
LLM-based Reinforcement Learning audio edit model
Step-Audio-EditX is an open-source, 3 billion-parameter audio model from StepFun AI designed to make expressive and precise editing of speech and audio as easy as text editing. Rather than treating audio editing as low-level waveform manipulation, this model converts speech into a sequence of discrete “audio tokens” (via a dual-codebook tokenizer) — combining a linguistic token stream and a semantic (prosody/emotion/style) token stream — thereby abstracting audio editing into high-level... -
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CPAT
RNA coding potential assessment tool
...While still very useful, these approaches have several limitations: Most lncRNAs are less conserved and tend to be lineage specific which greatly limit the discrimination power of alignment-based methods. For example, of 550 lncRNAs detected from zebrafish, only 29 of them had detectable sequence -
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OpenSign
🔥 The free & Open Source DocuSign alternative
The premier open source document signing solution (DocuSign alternative). Welcome to OpenSign, the premier open source docusign alternative - document e-signing solution designed to provide a secure, reliable and free alternative to commercial esign platforms like DocuSign, PandaDoc, SignNow, Adobe Sign, Smartwaiver, SignRequest, HelloSign & Zoho sign. Our mission is to democratize the document signing process, making it accessible and straightforward for everyone. -
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AutoClicker 2026
AutoClicker 2026 Release for Linux & Windows & Apple
...It features Bézier Curve Technology - Smooth, non-linear cursor paths. Natural Playback - Advanced trajectory calculation from click A to click B, a user-friendly tabbed interface with global hotkey control (F1/F2), sequence chaining for complex workflows, and loop support for repetitive tasks. Save recordings as JSON files, combine multiple recordings, and repeat actions automatically. Built with Tkinter, it requires Python 3.7+ (pyautogui, pynput, numpy). Can be packaged as a standalone executable using PyInstaller for Windows/Linux. Perfect for legitimate automation tasks on systems you own or have permission to automate. ... -
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proSeq
ProSeq is a GUI program to edit and analyse DNA polymorphism datasets
ProSeq ('Processor of sequences') is a package including GUI and command line programs to process and analyse DNA polymorphism data. It allows one to open and save sequence data in over a dozen file formats (and convert between these formats). It shows sequence alignments in a graphical window and allows the user to edit, manipulate and analyse sequences in various ways. ProSeq4 includes tools to analyse DNA polymorphism, scan for selection, do PCA and reconstruct phylogenies from sequence or SNP data. ... -
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PingChecker
Ping Multiple Targets in Sequence
PingChecker is a tool I wrote to help myself with pinging multiple hostnames or IP addresses for the purpose of determining patterns. You can enter targets yourself, or read names stored in a file, and ping all of them in sequence. The results are saved in both plain text and CSV format for easy viewing. I digitally sign some files in my releases. If you'd like to verify those signatures, you can find my PGP/GPG keys at: https://marcusadams.me/keys.html If you'd like to donate there's several ways to do so: PayPal: https://paypal.me/gerowen Bitcoin (BTC): bc1q86c5j7wvf6cw78tf8x3szxy5gnxg4gj8mw4sy2 Monero (XMR): 42ho3m9tJsobZwQDsFTk92ENdWAYk2zL8Qp42m7pKmfWE7jzei7Fwrs87MMXUTCVifjZZiStt3E7c5tmYa9qNxAf3MbY7rD LiberaPay: https://liberapay.com/gerowen -
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SheetAtlas
Search and compare data across multiple Excel files instantly
SheetAtlas is a free, cross-platform tool for searching and comparing multiple Excel files as a unified database. 100% offline — your data never leaves your computer. KEY FEATURES Unified Search Load unlimited files (.xlsx, .xls, .csv) and search across all sheets with regex support. Row Comparison Compare rows from different files with intelligent column mapping and visual diff highlighting. Data Export Export to Excel or CSV with column filtering, semantic names, and... -
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Visual Brainstorm
Program to make Brainstorm Trees.
Visual Brainstorm is software to help brainstorm, collect and sequence data. With it you can construct Brainstorm Trees to help you solve problems, write, write code and do research. A Tree file can have multiple root nodes thus you can have multiple trees with a single file. Nodes can be colored to your liking and their children will inherit property's of the parent. You can drag and drop images into a node.
