Search Results for "multiple sequence alignment"
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Showing 16 open source projects for "multiple sequence alignment"
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Run Any Workload on Compute Engine VMsCompute Engine delivers high-performance virtual machines for web apps, databases, containers, and AI workloads. Choose from general-purpose, compute-optimized, or GPU/TPU-accelerated machine types—or build custom VMs to match your exact specs. With live migration and automatic failover, your workloads stay online. New customers get $300 in free credits.
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LLM Course
Course to get into Large Language Models (LLMs)
...It emphasizes reproducible experiments: each step is demonstrated with runnable code, clear dependencies, and references to commonly used open-source models and libraries. Learners get exposure to multiple adaptation strategies—LoRA/QLoRA, instruction fine-tuning, and alignment techniques—so they can choose approaches that fit their hardware and budgets. The materials also cover inference optimization and quantization to make serving LLMs feasible on commodity GPUs or even CPUs, which is crucial for side projects and startups. Evaluation is treated as a first-class topic, with examples of automatic and human-in-the-loop methods to catch regressions and verify quality beyond simple loss values. ... -
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Node Thermal Printer
Node.js module for thermal printers command line printing
node-thermal-printer is a Node.js library that enables communication with thermal receipt printers using ESC/POS commands. It is designed for point-of-sale (POS) applications, allowing developers to generate receipts, barcodes, QR codes, and formatted text. -
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Automa
A chrome extension for automating your browser by connecting blocks
Automa is a browser extension for browser automation. From auto-fill forms, doing a repetitive task, taking a screenshot, to scraping data of the website, it's up to you what you want to do with this extension. Automa has provided various kinds of blocks that will help you do automation, and all you need to do is connect them. Want your workflow to run every day or every time you visit a specific website? You can set the workflow trigger on the trigger block. Try a workflow from the... -
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frame.js
JavaScript Sequence Editor
frame.js is a tiny utility for orchestrating frame-based animations with requestAnimationFrame while keeping code clean and predictable. It abstracts the boilerplate of setting up a render loop, tracking elapsed time, and updating callbacks at the right cadence. By providing a simple lifecycle—start, stop, tick—it encourages separation between state updates and rendering, which is essential for smooth visuals. The library aims to be unobtrusive: you can drop it into demos or prototypes... -
Build AI Apps with Gemini 3 on Vertex AIVertex AI gives developers access to Gemini 3—Google’s most advanced reasoning and coding model—plus 200+ foundation models including Claude, Llama, and Gemma. Build generative AI apps with Vertex AI Studio, customize with fine-tuning, and deploy to production with enterprise-grade MLOps. New customers get $300 in free credits.
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UglifyJS 3
JavaScript parser, mangler, compressor, beautifier toolkit
UglifyJS is a JavaScript compressor/minifier written in JavaScript. It also contains tools that allow one to automate working with JavaScript code. A parser which produces an abstract syntax tree (AST) from JavaScript code. A code generator which outputs JavaScript code from an AST, also providing the option to get a source map. A compressor (optimizer). it uses the transformer API to optimize an AST into a smaller one. A mangler, reduce names of local variables to (usually) single-letters.... -
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Underscore.js
JavaScript's utility belt
Underscore.js is a JavaScript utility-library created by Jeremy Ashkenas that provides a broad set of functions for working with arrays, objects, functions, and other data types — essentially a “utility belt” for functional programming in JS. Instead of extending built-in objects or modifying prototypes, Underscore provides its helpers in a single _ namespace, enabling cross-browser support and consistent behaviour across environments. It offers map/filter/reduce, deep-cloning, templating,... -
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lint-staged
Run linters on git staged files
Run linters against staged git files and don't let anything slip into your code base! Linting makes more sense when run before committing your code. By doing so you can ensure no errors go into the repository and enforce code style. But running a lint process on a whole project is slow, and linting results can be irrelevant. Ultimately you only want to lint files that will be committed. This project contains a script that will run arbitrary shell tasks with a list of staged files as an... -
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OpenSign
🔥 The free & Open Source DocuSign alternative
The premier open source document signing solution (DocuSign alternative). Welcome to OpenSign, the premier open source docusign alternative - document e-signing solution designed to provide a secure, reliable and free alternative to commercial esign platforms like DocuSign, PandaDoc, SignNow, Adobe Sign, Smartwaiver, SignRequest, HelloSign & Zoho sign. Our mission is to democratize the document signing process, making it accessible and straightforward for everyone. -
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BIGSdb
Software for storing and analysing bacterial sequence data
The Bacterial Isolate Genome Sequence Database (BIGSdb) is a scalable, web-accessible database system designed to store and analyse linked phenotypic and genotypic information in a computationally efficient manner. Sequence data can range from single sequence reads to multiple contigs generated by whole genome sequencing technologies. The system incorporates the capacity to define and identify any number of loci and genetic variants at those loci within the stored nucleotide sequences. ... -
Easily Host LLMs and Web Apps on Cloud RunRun frontend and backend services, batch jobs, host LLMs, and queue processing workloads without the need to manage infrastructure. Cloud Run gives you on-demand GPU access for hosting LLMs and running real-time AI—with 5-second cold starts and automatic scale-to-zero so you only pay for actual usage. New customers get $300 in free credit to start.
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Nexplorer is a web-based phylogenetic browser, used to view and edit comparative data, and ideal for creating publication-quality views in which the tips of a tree are aligned with the rows of a character matrix (e.g., a sequence alignment).
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x-spreadsheet
A web-based JavaScript (canvas) spreadsheet
...These parameters are loaded in the first instantiation, and can also be set later, but it is recommended to modify and load in advance the changes that you need to change. You can adjust the number of columns displayed by default len, AZ, the default width of each column, the default width widthof the left sequence column indexWidth, and the default minimum width of each columnminWidth. You can adjust the style of table rendering. Some of the features include undo and redo, paint format, clear format, format, font, font size, font bold, font italic,, underline, strike, text color, fill color, borders, merge cells, align, text wrapping, freeze cell, functions, resize row-height, col-width, copy, cut, paste, autofill, insert row, column, delete row, column, hide row, column, multiple sheets, print, and data validations. -
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Mousetrap
Simple library for handling keyboard shortcuts in Javascript
...Mousetrap has been tested and should work in Internet Explorer 6+, Safari, Firefox, and Chrome. The bind method is the main call you will be making. This will bind a specified keyboard command to a callback method. If you want to bind multiple key commands to the same callback you can pass in an array for the first argument. Mousetrap 1.4 introduced a generic mod helper which lets you set cross platform shortcuts. The sequence of keys feature was inspired by Gmail. Any keys separated by a space will be considered a sequence. If you type each key in order the final one in the sequence will trigger the callback. ... -
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Buckets
A complete, fully tested and documented data structure library
...Dictionaries map keys to values, each key can map to at most one value. A heap is a binary tree that maintains the heap property. Every node is less than or equal to each of its children. A linked list is a sequence of items arranged one after another. A multi dictionary is a special kind of dictionary that holds multiple values against each key. In a priority queue, each element is associated with a "priority", and elements are dequeued in the highest-priority-first order (the elements with the highest priority are dequeued first). -
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Editor.md
The open source embeddable online markdown editor (component)
The open source embeddable online markdown editor (component), based on CodeMirror & jQuery & Marked. The available dependents are CodeMirror, marked, jQuery, FontAwesome, github-markdown.css, KaTeX, prettify.js, Rephael.js, flowchart.js, sequence-diagram.js, and Prefixes.scss. You can enable HTML tags decode, TeX, Flowchart, sequence diagram, Emoji, FontAwesome, task lists. You can also enable image upload, [TOCM], search replace features, code fold, etc. Combine multiple JS module files used by CodeMirror to greatly reduce HTTP requests and speed up downloading. In addition, when using Require.js, because of CodeMirror's strict module dependency restrictions, the merged module files cannot be used, and multiple module files are still dynamically loaded. ... -
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Digital Expression on the Web
DEW is a platform that allows users to explore RNA-Seq data
...The analysis proceeds as such: gapped alignments are performed and corrected for length, PCR and fragment bias so that a Fragment Per (effective) Kilobase per Million of reads (FPKM) is estimated as well as the simpler Reads Per Kb per Million of reads (RPKM). When provided with multiple isoforms and in the ‘contextual’ mode, corrections include a expectation maximization algorithm estimates effective expression profiles and a corrected alignment is produced. For each gene the user provides, DEW computes coverage descriptive statistics (RPKM, FKMP and total, mean and median corrected counts), expression profiles (normalized as R/FPKM and trimmed mean of fold change). ... -
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It's a browser based video editing tool that exports in FCP XML format. Give clients access to previews, mark in and out points and leaving comments, all in a sequence you can import directly into your project. Additional export formats coming soon.
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