Search Results for "bis-snp" - Page 2
Sort By:
Showing 179 open source projects for "bis-snp"
View related business solutions-
Our Free Plans just got better! | Auth0 by OktaYou asked, we delivered! Auth0 is excited to expand our Free and Paid plans to include more options so you can focus on building, deploying, and scaling applications without having to worry about your secuirty. Auth0 now, thank yourself later.
-
Bright Data - All in One Platform for Proxies and Web ScrapingBright Data offers the highest quality proxies with automated session management, IP rotation, and advanced web unlocking technology. Enjoy reliable, fast performance with easy integration, a user-friendly dashboard, and enterprise-grade scaling. Powered by ethically-sourced residential IPs for seamless web scraping.
-
1
FEATnotator is a light weight, fast and easy to use, open source software program that annotates different kinds of next generation analysis data based on known reference genome annotation information. For SNP data, it also predicts the effect of SNPs in the protein coding regions on the codons involved and marks SNPs potentially affecting start and stop codons and splice sites. It also identifies features of user’s interest, such as genes, or biomarkers in the vicinity of the features...
-
2
BisSNP
Bisulfite-seq/NOMe-seq SNPs & cytosine methylation caller
Now in Github: https://github.com/dnaase/Bis-tools/tree/master/Bis-SNP BisSNP is a package based on the Genome Analysis Toolkit (GATK) map-reduce framework for genotyping in bisulfite treated massively parallel sequencing (Bisulfite-seq, NOMe-seq and RRBS) on Illumina platform. It uses bayesian inference with either manually specified or automatically estimated methylation probabilities of different cytosine context(not only CpG, CHH, CHG in Bisulfite-seq, but also GCH et.al. in other... -
3
PPLine
SNP calling, annotation and gene/transcripts expression quantification
PPLine is a Python-based suite aimed to process raw RNA-seq or Exome-seq data. PPLine provides: - read mapping (STAR/Tophat2/bowtie/bowtie2), including novel splice junsctions discovery - gene and transcript expression estimation (HTSeq-count/Cufflinks) - SNP calling with BQSR and indel realignment (samtools/GATK) - variant annotation (Annovar) - novel transcripts discovery (Cufflinks) - predicting proteotypic peptides and creating ref/alt proteins fasta-database - integration... -
4
fcGENE: Genotype format converter
Format converting tool for genotype Data (e.g.PLINK-MACH,MACH-PLINK)
Main application is twofold: first to convert genotype SNP data into formats of different imputation tools like PLINK MACH, IMPUTE, BEAGLE and BIMBBAM, second to transform imputed data into different file formats like PLINK, HAPLOVIEW, EIGENSOFT and SNPTEST. Readable file formats: plink-pedigree (ped and map), plink-raw, plink-dosage, mach , minimac, impute, snptest, beagle and bimbam. Similarly all kinds of imputation of outputs are also accepted. Formats which can be generated... -
Sage Intacct Cloud Accounting and Financial Management SoftwareDrive your organization forward with the right solution at the right price. AI-powered continuous accounting and ERP to support your growth now and into the future.
-
5
A comparative synteny analysis tool for target-gene SNP marker discovery: connecting genomics data to breeding in Solanaceae * The foundation of this web source is CodeIgniter. * After setting the CodeIgniter framework, unzip it under the default home directory. The database is based on Maria DB (mysql). Download the schema and import it into the DB. Each species you want to analyze needs blast results. Fit the fields to match the schema and it will work.
-
6
OMSI 2 Freeware Add-on Eberlinsee
Willkommen in Eberlinsee! Eine Stadt, wo man sich wohlfühlen kann.
Willkommen in Eberlinsee! Eine Stadt, wo man sich wohlfühlen kann. Fahre mit deiner Straßenbahn durch die recht idyllische Umgebung und entdecke zahlreiche realistische und abwechslungsreiche Stadt & Überlandstrecken. Mit viel Liebe zum Detail wurde die Map schon seit einigen Jahren gebaut und wartet nun auf dich, sie mit deiner Straßenbahn zu befahren und Personen von A nach B zu bringen. Kartoffelphantom und das GamesAry Publishing Team wünschen viel Spaß beim... -
7
OMSI 2 Freeware Mod KI-Charaktere
New characters for OMSI 2 - Free
Du hast es satt die „Standard Charaktere“ in OMSI zu sehen? Dann wird es Zeit für diese Modifikation. Zahlreiche neue Charaktere erwarten dich in diesem Mod. Von Jugendliche bis hin zu Erwachsenen. In den kommenden Updates werden noch zahlreiche weitere Verbesserungen an den jetzigen Personen vorgenommen und auch noch neue Charaktere hinzugefügt. Du hast noch Verbesserungsvorschläge ? Dann schreibe uns an, wir leiten es weiter. Der Entwickler benötigt Hilfe. Falls du dich mit dem Bauen der... -
8
OMSI 2 Add-on K-Bergbahn
Die schöne fiktive Stadt „Zille“ ist ..
Die schöne fiktive Stadt „Zille“ ist ein touristischer Magnet im Sauerland. Viele Touristen aus dem Ruhrgebiet und Niedersachsen fahren gerne dorthin, um in der idyllischen Stadt einen schönen Tag zu verbringen oder sich auch ein paar Tage Urlaub zu gönnen. Neben einer bergigen Landschaft und den vielen kleinen Dörfern werden insgesamt zwei befahrbare Linien mitgeliefert. Die Linie 1 der K-Bergbahn fährt von der Talstation bis zum Berg und benötigt etwa 15 Minuten dafür. Im Ort „Zille“ und... -
9
Collaborative Computing Project for NMR
Collaborative Computing Project for NMR (CCPN)
The Collaborative Computational Project for NMR (CCPN) provides tools and knowledge to maximise the impact of the biological NMR studies. The CCPN software facilitates data analysis and software integration. The project actively promotes the exchange of knowledge and provides training and best practices for the NMR community. CCPN also has a leading role in the development of a NMR data-sharing standard and coordination of NMR instrumentation proposals for RCUK and BIS. The 28 partners of CCPN... -
Powering the next decade of business messaging | Twilio MessagingXBuild unique experiences across SMS, MMS, Facebook Messenger, and WhatsApp – with our unified messaging APIs.
-
10
REHUNT
REHUNT (Restriction Enzymes HUNTing)
REHUNT (Restriction Enzymes HUNTing) is a free and open source package implemented in JAVA for providing many useful methods for biological sequence analysis (especially in SNP genotyping) around restriction enzymes. All academic researchers are encouraged to use REHUNT in their studies or to integrate it into their systems and applications. Non-academic users or commercial needs are also welcome to use it. For further information or additional applications, please contact the author Yu-Huei... -
11
QSdpR
Viral Quasispecies Reconstruction software based on QSdpR algorithm
This is a viral quasispecies reconstruction software for quasispecies assembly problem on mRNA viruses, which is based on a correlation clustering approach and uses semidefinite optimization framework. The software accepts a reference genome, a NGS read set aligned to this reference and set of SNP locations in the form of a vcf file and outputs an optimal set of reconstructed species genomes which describes the underlying viral population. -
12
eEÜR mini Buchhaltung mit LibreOffice
eEÜR Version 1.10.3 Januar 2017
Mini-Buchhaltung mit LibreOffice oder OpenOffice.org. Version 1.10.3 vom 9. Januar 2017 ACHTUNG: Aufgrund eines Bugs in LibreOffice Version 4.1.2 läuft das Programm nicht in dieser Version. Bis Version 4.0.1.2 funktioniert es und dann wieder an 4.1.3. Angebotserstellung, Rechnungserstellung, Lager und Kundenverwaltung, sowie Buchhaltung mit Einnahmen-Überschuß-Rechnung in einer einzigen ODS-Datei. Angebote können in Rechnungen übernommen werden. Es sind 2 Steuersätze (und 0%) in einer... -
13
GPU3SNP
Exhaustive search for third order epistatic interactions using CUDA
GPU3SNP is a multi-GPU tool that exhaustively analyzes case-control datasets looking for 3-SNP combinations that present epistatic interaction. It provides a list with the combinations that have higher Mutual Information, which is used as measure for interaction. It is parallelized using CUDA and can exploit several GPUs in the same node/system. -
14
WebKOBIS ERP3
WebKOBIS ERP3 v2 is a low cost BIS with advance MRP,HRM,QMS,DMS & CRM
WebKOBIS ERP3 is an ERP as a cloud service that covers all business, especially production processes for small to large-sized companies. As a low cost All-In-One system WebKOBIS ERP3 comes in TRADE, CRM, ERP, MRP, SMS (Strategic Management), PMS (ProjectManagement), QMS (Quality Management), DMS (Document Management), DAM (Digital Asset Management), PAM (Physical Asset Management), LMS (Logistic Managemtn), WSH (Work Safety and Healt Management), CMS (Client Management System ), HRM... -
15
SPANDx
Comparative analysis of haploid next-generation genome sequence data
SPANDx is your one-stop tool for identifying SNP and indel variants in haploid genomes using NGS data. SPANDx performs alignment of raw NGS reads against your chosen reference genome or pan-genome, followed by accurate variant calling and annotation, and locus presence/absence determination. SPANDx produces SNP and indel matrices for downstream phylogenetic analyses. Annotated, genome-wide SNPs and indels can also be identified if specified, and are output in human readable format... -
16
GPS Reviser
Analyze and change GPS coordinates and time in digital pictures
Version: 2.1.1 (BugFix in GMLib) GPS–Koordinaten in Digitalaufnahmen sind hilfreich zur Einordnung der Bilder. Leider dauert es oft länger, bis die Kamera die korrekten GPS-Daten ermittelt hat. Manchmal kann kein GPS-Signal empfangen werden. Es wäre daher hilfreich, wenn man die Daten bei der Sichtung der Bilder ergänzen oder korrigieren kann. Dies wird durch das Programm unterstützt. Das Programm scannt zunächst die Bilder in einem Verzeichnis und ermittelt fehlende Daten oder... -
17
Edesign
Primer and enhanced internal probe design tool
Edesign is a design tool for PCR primers together with an internal probe for conducting quantitative PCR and genotypic experiments. - Functions for designing internal probes are greatly enhanced. - "Genotyping mode" provides design of the internal probe over a user-specified target variant e.g. (SNP, insert/deletion, somatic mutation etc) for genotyping. - Modified oligonucleotide can be designed. The original Edesign treats Eprobe and Eprimer. For technical support please contact... -
18
The friendly GWAS SNP enrichment tool
Tests for enrichment of GWAS SNPs in epigenetic datasets
User friendly program written in python and using bedtools to test for enrichment of GWAS SNPs in genomic annotation datasets. A specific feature is it tests for enrichment by locus not by individual SNPs. The user supplies 3 types of files. The first two files are a list of target SNPs and a list of background SNPs. To make the program user friendly the input format is simply the raw output from the popular haploreg program. Simply cut and paste that output into a text file. The genomic... -
19
GSA-SNP is a gene set analysis software that can process SNP data as well as gene and haplotype data.
-
20
5.Kernelized qtl-haplotype mapping (HPC)
Fortran/R program for kernelized qtl-haplotype mapping by mixed model
Kernelized qtl-haplotype mapping (named KHAMMIX) is a Fortran/R program which performs parallel haplotype based scans of chromosomes, by mixed model analyses, for diploid organisms. Two kernels; the Gaussian and Van Raden kernels, are allowed for the mixed model analyses. The haplotypes are defined by a sliding window of L SNP markers (L is an integer greater or equal to 1). Hence, 2^L haplotypes can be (not necessarily) observed for a sliding window (e.g. 2^6=64 for L=6). Reference: http... -
21
6. DHOEM (Windows)
R function which incorporates simulated markers to a real data set
DHOEM (Densification of Haplotypes by lOEess and Maximum Likelihood) is a novel R application which performs simulation of new markers in real SNP marker data. The new markers are generated according to real local data characteristics, modeled statistically, and are interpolated locally between real markers in the data. The function allows the user to specify a desired level of marker density, with a minor allele frequency (MAF) limit, which is produced in a reasonable computation time... -
22
SPRITE
Parallel SNP detection pipeline
SPRITE is an open-source software package providing a parallel implementation of the Single Nucleotide Polymorphisms (SNP) detection genomic data analysis workflow. It consists of three tools: PRUNE for read alignment, SAMPA for intermediate file processing, and PARSNIP for parallel SNP calling. -
23
IntParser
Code for parsing and subsetting UKBB Intensity data
WARNING this code is LARGELY UNTESTED. It can be used to pick a subset of SNPs from UKBB binary intensity format and convert them into text format , or transpose them so you can look at then per SNP. It can also be used to convert UKBB binary intensity data to Evoker's .bnt binary intensity format. -
24
Duty Plan
Creates 24h-Duty-Plans by considering preferences for up to 20 Persons
Diese schlanke und kostenlose Excel-Tabelle erlaubt es, für bis zu 20 Personen einen 24 Stunden Dienstplan zu erstellen. Die Software Berücksichtigt dabei Wünsche, Abwesenheit und Rufbereitschaften der einzelnen Personen. Nachdem eine Übersicht erstellt wurde, wird der Dienstplan mit der optimalen Verteilung der Dienste erstellt. Hierbei werden Feiertage und Wochenenden Berücksichtigt. Die Software ist nutzbar für alle Monate und Jahre. -
25
Rechentrainer
Rechentrainer - Lernprogramm zum Üben der Grundrechnungsarten
Der Rechentrainer ermöglicht es, sämtliche Grundrechnungsarten individuell zu üben. Er eignet sich besonders für Kinder von 6 bis 12 Jahren. Im Programm kann man individuell die verschiedenen Grundrechnungsarten (Addition, Subtraktion, Multiplikation und Division) auswählen und üben. Für die Strichrechnungen ist der Zahlenraum einstellbar. Bei den Punktrechnungen kann man einzelne Mal- oder Divisionsreihen auswählen. Das Programm gibt motivierende positive Rückmeldungen bei richtig...