Search Results for "genetic algorithm c" - Page 15

Showing 1385 open source projects for "genetic algorithm c"

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  • 1

    iCAS - An Illumina Clone Assembly System

    An Illumina clone assembly system using SOAPdenovo and ABySS

    Clone-by-clone sequencing, as a means of achieving high quality assemblies for large and complex genomes, continues to be of great relevance in the era of high throughput sequencing. However, assemblies obtained using current whole genome assemblers are often fragmented and sometimes have issues of genome completeness owing to different data characteristics introduced by multiplexed sequencing. With iCAS the data filtering process is based on a novel kmer frequency algorithm, resulting...
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  • 2

    REDHORSE

    Software suite for the analysis of haploid hybrids using NGS

    ...We therefore designed a software suite called REDHORSE that takes genomic alignments as input, extracts meaningful markers and generates MSAs that are the inputs to existing RD algorithms. In addition, REDHORSE implements a custom RD algorithm that makes use of sequence information and genomic positions to accurately detect crossovers. REDHORSE is portable and platform independent suite that provides efficient analysis of genetic crosses based on NGS data.
    Downloads: 0 This Week
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  • 3
    Morpheus search algorithm

    Morpheus search algorithm

    a mass spectrometry–based proteomics database search algorithm

    ...It is written in C# and is available open source under the permissive MIT License.
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  • 4
    This software searches the potential energy surface of small to medium size atomic systems for global minima using quantum ab initio techniques. It performs bond rotations and molecule translations and rotations on a Linux cluster with MPI.
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  • 5
    PortOpt

    PortOpt

    A portfolio-optimizer using Markowitz(1952) mean-variance model

    PortOpt [Portfolio Optimizer] is a C++ program (with Python binding) implementing the Markowitz(1952) mean-variance model with agent's linear indifference curves toward risk in order to find the optimal assets portfolio under risk. You have to provide PortOpt (in text files or - if you use the api - using your own code) the variance/covariance matrix of the assets, their average returns and the agent risk preference.
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  • 6
    SFS_CODE (Selection on Finite Sites under COmplex Demographic Events) performs forward population genetic simulations under a general Wright-Fisher model with arbitrary demographic, selective, and mutational effects.
    Downloads: 2 This Week
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  • 7
    PopED lite

    PopED lite

    Simple, Fast, Intuitive optimal design software for preclin PKPD study

    In order to maximise model based understanding of pharmacokinetic-pharmacodynamic (PKPD) studies, it is essential to choose sensible dosages and sampling times for experiments. PopED lite can help you improve your experimental design by algorithmically searching through possible experimental designs and suggesting the optimal experimental design. The algorithm is based on mathematically sound optimal design theory; however, PopED lite is made for users without any background in optimal...
    Downloads: 0 This Week
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  • 8
    GGNFS is an open source implementation of General Number Field Sieve algorithm for factoring integers.
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    Downloads: 1 This Week
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  • 9

    vtrunkd

    Network link bonding/trunking/aggregation and multichannel VPN daemon

    vtrunkd - network link bonding and multichannel VPN. Vtrunkd is a Linux VPN daemon used to combine several connection paths into one aggregated channel. Features latency, reordering and jitter management, behaviour analysis optimizations for encapsulated protocols, bufferbloat control, packet redundancy, and multiple cpu cores utilization. Up to 30 heterogenous links bonding supported. Used for live streaming, LTE/3G/Wi-Fi link bonding. 32/64-bit, x86, MIPS and ARM supported. Supports python...
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  • 10
    LaNet-vi provides images of large scale networks on a two-dimensional layout. The algorithm is based on the k-core and k-dense (m-core) decomposition. For more details see http://lanet-vi.fi.uba.ar.
    Downloads: 0 This Week
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  • 11
    BONDA3D Designer

    BONDA3D Designer

    3D Contents Moding Tool

    BONDA3D Designer is a world-class 3D modeling software which can be spread in the 3D computing environment affecting various industries. * Software for modeling and printing 3D objects. ­- Forward Engineering for three-dimensional modeling. ­- Various 3D modeling formats such as STL, OBJ, PLY, AMF, COLLADA, etc. ­- G-Code conversion with calculating the nozzle speed and the amount of compression, etc. ­- BONDA3D supports Layer Slicing less than 0.01mm ­- Visualization of objects...
    Downloads: 2 This Week
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  • 12

    Adaptive Difficulty Chinese Chess

    A Chinese chess game including an adaptive computer opponent.

    This project is an application of POSM algorithm on Chinese chess computer player. A computer player is implemented, which will adapt to the its opponent by adjusting its playing strength accordingly.
    Downloads: 0 This Week
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  • 13

    CrypSten

    A Hybrid Cryptosystem with Steganography DLL

    A library written in Visual C# for encrypting a text message into an image file, and decrypting an image file to get the text message using Rijndael Algorithm, RSA Algorithm, and LSB Substitution Algorithm.
    Downloads: 0 This Week
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  • 14
    Scaffold_Builder

    Scaffold_Builder

    Combining de novo and reference-guided assembly with Scaffold_builder

    Scaffold_builder is software to order contigs generated by draft sequencing along a reference sequence. Gaps are filled with N's and small overlaps are aligned with Needleman–Wunsch algorithm and the consensus created with IUPAC codes. Scaffold_builder can help in the assembly and annotation of genomes by revealing what is missing and allowing targeted sequencing to close those gaps. (c) Silva GG, Dutilh BE, Matthews TD, Elkins K, Schmieder R, Dinsdale EA, Edwards RA. Please cite: "Combining de novo and reference-guided assembly with Scaffold_builder", Source Code for Biology and Medicine 2013.
    Downloads: 0 This Week
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  • 15
    GloVe

    GloVe

    GloVe model for distributed word representation

    GloVe is an unsupervised learning algorithm for obtaining vector representations for words. Training is performed on aggregated global word-word co-occurrence statistics from a corpus, and the resulting representations showcase interesting linear substructures of the word vector space. The links provided contain word vectors obtained from the respective corpora. If you want word vectors trained on massive web datasets, you need only download one of these text files! Pre-trained word vectors...
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  • 16
    New Terrain and 3D Map System

    New Terrain and 3D Map System

    a very lightweight advanced terrain-rendering and 3D map rendering sys

    ...Seme as point 2.. Multithread terrain-rendering, roads on it, and vehicles to go around. The most important part is terrain-rendering. The Algorithm at the heart of it features my first and second theorem abut polygonal surface approximation. It took something like 2 years to develop it. It's technically a view-dependent, continuous dynamic level-of-detail rendering algorithm. Main features are simplicity and documentation. Does easily a 4k x 4k terrain, but also much more.
    Downloads: 1 This Week
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  • 17

    GeneticAlgorithms

    Framework for using the Genetic Algorithms optimization heuristic.

    GeneticAlgorithms is a simple and lightweight framework to implement an optimization heuristic following the Genetic Algorithms model. A genetic algorithm mimics the natural processes of evolution, selection and "survival of the fittest". This framework is intuitive and good integrated with Java 1.5 SDK and later.
    Downloads: 0 This Week
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  • 18
    DenseBlocks

    DenseBlocks

    Unsupervised Classification Algorithm

    DenseBlocks is an unsupervised classification method for n-dimensional numerical data. It creates a multi-dimensional density representation of given training samples, defines clusters accordingly and returns this representation which can further be used to classify related data.
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  • 19

    BiRW

    Bi-random Walks for Phenome-Genome Association Prediction

    The availability of ontologies and systematic documentations of phenotypes and their genetic associations has enabled large-scale network-based global analyses of the association between the complete collection of phenotypes (phenome) and genes. BiRW is a package designed for analysis and prediction of the phenome-genome associations. BiRW package contains a program for analysis of circular bigraphs (CBGs) and the bi-random walk (BiRW) algorithm to capture the CBG patterns in the networks for unveiling human and mouse phenome-genome association. ...
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  • 20
    tiny-hyphenator

    tiny-hyphenator

    C++ Library to hyphenate a text

    Use this class to achieve efficient and mostly exact word hyphenations. Currently the only language supported is German, but it can very easily be adapted to support other languages. This library spans ~370 lines of C++ code. At the moment there is no real documentation, pleas refer to the comments in the code, they should be quite helpful. A sample is also included. This library is not based on any algorithm published on the internet or elsewhere and it works without a dictionary. The Library is written in C++ and is tested under GCC 4.7, 4.8 and 4.9 [Use it in any way you want, including commercial work, but please include my name and a link to this page]
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  • 21
    A P2P overlay construction toolkit, which supports routing algorithm researchers in addition to application developers. It provides multiple routing (DHT) algorithms such as Chord, Kademlia, Koorde, Pastry and Tapestry, and a distributed environment emu
    Downloads: 4 This Week
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  • 22
    FlightCraft3D: The Return

    FlightCraft3D: The Return

    extreme 3D flight simulator with advanced terrain rendering

    A rough, 3D extreme flight simulator in which there's a large terrain on which one can land: as the terrain-rendering is advanced and thus terrain is large, detailed and well visible, one can do wild flights in valleys, one can experiment with landing in any casual point of a wild, colorful area including mountous, hilly and flatty areas as well. The flightmodel is primitive here, but acceptable. I will try to do a second release in which the JSBSim module will be used to provide a more...
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  • 23
    libtext_bayes

    libtext_bayes

    Naive Bayes algorithm text classifier C++ library...

    This is a Naive Bayes text classifier library to C++, you can classify SPAM messages, genes, sentiment types in texts. Naive Bayes has been studied extensively since the 1950s. It was introduced under a different name into the text retrieval community in the early 1960s, and remains a popular (baseline) method for text categorization, the problem of judging documents as belonging to one category or the other (such as spam or legitimate, sports or politics, etc.) with word frequencies as...
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  • 24

    ExAM-Exome_Analysis_And_Mining

    A whole exome sequencing analysis package and its graphical interface

    During the past few years, whole exome sequencing has imposed itself for genetic research, largely due to its use for detection of causative mutations responsible for Mendelian disorders. As a consequence of their power and of the rapidly decreasing cost of these technologies, massive amount of exome sequencing data are generated and becoming available to a broadening community of scientists. However, these data remain difficult to analyze and interpret by the general scientific community,...
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  • 25
    MultiPlink

    MultiPlink

    [UPDATE 28-10-2015] FINAL MULTIPLINK SSH LIFETIME v2.0 UP-5 "FAREWELL"

    Download Link Utama: http://sourceforge.net/projects/multiplink/files/Final_MultiPlink_SSHLIFETIME_2.0_UP-5_FAREWELL.rar/download Jika di Halaman Download, Link belum tersedia, klik link alternatif : https://www.dropbox.com/s/znptxp2gxhihpax/Final_MultiPlink_SSHLIFETIME_2.0_UP-5_FAREWELL.rar?dl=0 Lalu Download & Install juga Minor...
    Downloads: 0 This Week
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