Search Results for "coverage" - Page 11
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Showing 440 open source projects for "coverage"
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Red Hat Enterprise Linux (RHEL) on Microsoft Azure provides a secure, reliable, and flexible foundation for your cloud infrastructure. Red Hat Enterprise Linux on Microsoft Azure is ideal for enterprises seeking to enhance their cloud environment with seamless integration, consistent performance, and comprehensive support.
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HubSpot is an AI-powered customer platform with all the software, integrations, and resources you need to connect your marketing, sales, and customer service. HubSpot's connected platform enables you to grow your business faster by focusing on what matters most: your customers.
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CoDeCZ
Derive copy number status from targeted sequencing data
CoDeCZ derives copy number state from targeted sequencing data on gene or exon level. Results are NOT true copy number however, but they are semi-quantitative: It uses the modified z-score to calculate deviation in normalized coverage per specified region. The higher the Z-score, the higher the copy number. The final z-score depends on the quality of the data and the makeup of the reference pool. -
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This PERL script was used in the study by Marine et. al (2013)* to calculate average sequence read coverage of each predicted ORF within a phage genome. *See the following open-access publication for more detail: Marine, R., C. McCarren, V. Vorrasane, D. Nasko, E. Crowgey, S. W. Polson, K. E. Wommack. 2013. Caught in the middle with multiple displacement amplification: The myth of pooling for avoiding MDA bias in a metagenome. Microbiome. Submitted
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AnotherFSM
State machines for Java, FSM.
AnotherFSM is yet another implementation of state machines, a library for Java programming language. -
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A group of Java-based testing tools and JUnit extensions aimed at increasing quality awareness and ease of introduction of testing tools into the development cycle. Examples are Automated documentation, class hierarchy unit testing, and code coverage.
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Define and Deliver Comprehensive Cybersecurity Services. Security threats continue to grow, and your clients are most likely at risk. Small- to medium-sized businesses (SMBs) are targeted by 64% of all cyberattacks, and 62% of them admit lacking in-house expertise to deal with security issues. Now technology solution providers (TSPs) are a prime target. Enter ConnectWise Cybersecurity Management (formerly ConnectWise Fortify) — the advanced cybersecurity solution you need to deliver the managed detection and response protection your clients require. Whether you’re talking to prospects or clients, we provide you with the right insights and data to support your cybersecurity conversation. From client-facing reports to technical guidance, we reduce the noise by guiding you through what’s really needed to demonstrate the value of enhanced strategy.
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ggcov is a GTK+ GUI for exploring test coverage data produced by C programs compiled with gcc --coverage. It's basically a GUI replacement for the gcov program that comes with gcc.
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Nan.System.Scripts
System-level script objects (JavaScript)
Nan.System.Scripts ver. 1.1.0-alpha The Nan.System.Scripts solution provides helper objects in JavaScript. NOTE: This is an alpha version and the public interfaces may change. CHANGES: v.1.1.0-alpha: finalized cloner/extender, fixed several bugs, extended test coverage. -
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Sequence Bias Correction
Sequence bias correction for BAM files without transcript annotations
This sequence bias correction program will take a BAM file of aligned reads and output that file with a correction flag for each read detailing the suggested sequence bias correction weight. It will also produce files for corrected splices and read coverage. -
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cmotif
A method for mining conditional phosphorylation motifs
Phosphorylation motifs represent position-specific amino acid patterns around the phosphorylation sites in the set of phosphopeptides. The discovery of phosphorylation motifs is a very valuable work in bioinformatics. Although several algorithms have been proposed to uncover phosphorylation motifs, the problem of efficiently discovering a set of significant motifs with sufficiently high coverage and non-redundancy still remains unsolved. In this paper, we propose an algorithm called C-Motif... -
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Protein Occupancy Profiling Pipeline
Pipeline for the analysis of protein occupancy profiling data
The Protein Occupancy Profiling Pipeline streamlines the analysis of protein occupancy profiling data and compares different experiments across conditions. To this end, we have implemented a number of modules that perform the following analysis steps: read processing, read mapping, transcriptome-wide read coverage and position-specific T-C transition event profiling as well as global comparison to genomic features and across different experiments (e.g. calling differentially occupied sites... -
Out-of-the-box scripts. Around-the-clock monitoring. Unmatched automation capabilities. Start doing more with less and exceed service delivery expectations.
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A Unibasic Code Coverage tool. It produces formatted HTML reports on the statement coverage of selected source files. Designed for UniData but should is being ported to UniVerse (still in development, but compiles and works on demonstration programs).
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Easy Coverage for Java
Dynamically generated unit tests for basic verifications.
Easy Coverage is a tool that can dynamically generate unit tests to perform basic verifications, thus leaving more time for the developers. When writing unit tests, developers often have to write the same elementary verifications over and over for most classes. This is tedious and error-prone, and keeps developers away from writing more meaningful unit tests. Easy Coverage is extensible and highly configurable. It can work as a standalone product, or be used with JUnit, which is highly... -
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blastplot
A simple and easy to use perl package to plot blast output results
The development of Next Generation Sequencing (NGS) during the last decade has created an unprecedented amount of sequencing data, as well as the ability to rapidly sequence specimens of interest. Read-based BLAST analysis of NGS data is a common procedure especially in the case of metagenomic samples. However, coverage is usually not enough to allow for de novo assembly. This type of read-based analysis often creates the question of how a set of reads that align to the same sequence... -
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SIG2014
Système d'information géographique
is an open source software server written in Java that allows users to share and edit geospatial data. Designed for interoperability, it publishes data from any major spatial data source using open standards. Being a community-driven project, GeoServer is developed, tested, and supported by a diverse group of individuals and organizations from around the world. GeoServer is the reference implementation of the Open Geospatial Consortium (OGC) Web Feature Service (WFS) and Web Coverage... -
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A music catalog reporting tool, It reports the coverage of songs in music catalog files. Two modes of reporting are supported; missing and found songs in the catalog files. Songs are found by recursively searching folders.
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EJCCMTools
Generation of EJCCM files from SAM/BAM files
EJCCMTools is a Java software package for compression of SAM or BAM files, performing subsequent gene or transcript expression profiling and visualizing gene read coverage profiles. This novel compression scheme reduces file size by a factor of 214 compared to BAM files while keeping the full ability to analyze and visualize gene and isoform expression levels. As a result of the compression EJCCM files are generated. These files can be indexed and queried using Tabix. -
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bcov is a code coverage tool similar to gcov. Unlike gcov, it does not require recompiling the project for coverage. Coverage is determined by using temporary breakpoints, which causes minimal overhead. gcov produces a lcov style coverge report.
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Tiba Menu
Quick Menu for HF Tiba summary coverage
It is the small set of presentation to the global company that have good view in simple and quick coverage to be represented to public or specific levels of management -
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HF ALL Ethics
All HF Ethics coverage 2013G - ISO
All HF Ethics coverage 2013G ISO File Format -
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News articles remarks coverage
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Excellent management of test cases can make the testing process efficient, and thus accelerates the software delivery. With the popularity of the JUnit testing framework in Java software testing, developers are aching for JUnit test case management aids in regression testing of Java software. Typically, most existing tools are based on the coverage information. However, coverage information may need extra efforts to obtain. To make things easy, we present an Eclipse IDE plug-in (named Jtop...
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Extends Cobertura to measure and report on code covered by unit tests in same package. Also adds improved reporting features, including measuring code coverage against a coverage policy.
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FishingCNV
Copy number variation (CNV) detection in exome sequencing data
FishingCNV, a software tool developed at McGill University, is a tool for comprehensive analysis of rare copy number variations in high-throughput exome sequencing data. The inputs are standard coverage files produced by Genome Analysis ToolKit (GATK), and the output is a file containing putative CNVs. The program comes in 2 different releases * GUI version (FishingCNV_X.X.X.zip) * Command line version (FishingCNV_X.X_pipeline) Browse through our files to find the different releases. -
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PASHA: Parallelized Short Read Assembly
One of the fastest parallel short read assemblers for large genomes.
PASHA is a parallel short read assembler for large genomes using de Bruijn graphs. Taking advantage of both shared-memory multi-core CPUs and distributed-memory compute clusters, PASHA has demonstrated its potential to perform high-quality de-novo assembly of large genomes in reasonable time with modest computing resources. Our evaluation using three small real paired-end datasets shows that PASHA is able to produce better assemblies with comparable genome coverage and mis-assembly rates... -
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Elevation Mapper
Elevation map creation software, customized to GPS coordinate settings
The Elevation Mapper software is used to create elevation maps and data files customized to your project site. It will create contour line and filled contour plots. The plots are georeferenced so they can easily be viewed on Google Earth or ArcGIS or most GIS applications. It creates a csv data file with the elevations and GPS coordinates throughout the site. It also downloads the dem files for the site area. Complete elevation coverage of Canada is provided. The demo version is fully... -
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