MIRA - Sequence assembler and sequence mapping for whole genome shotgun and EST / RNASeq sequencing data. Can use Sanger, 454, Illumina and IonTorrent data. PacBio: CCS and error corrected data usable, uncorrected not yet.

Features

  • Allows hybrid assemblies of Sanger, 454, Solexa, IonTorrent and PacBio (CCS & ecCLR) data
  • Can use paired-end and / or unpaired data
  • Supports ancillary data in TRACEINFO format (from NCBI)
  • Marks places of interest with tags so that these can be found quickly in finishing programs
  • Has a SNP analysis pipeline for sequencing data of viruses and procaryonts

Project Activity

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Categories

Bio-Informatics

License

GNU General Public License version 2.0 (GPLv2)

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MIRA Web Site

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Additional Project Details

Operating Systems

Linux, BSD, Mac

Intended Audience

Science/Research, Advanced End Users

User Interface

Command-line

Programming Language

C++

Related Categories

C++ Bio-Informatics Software

Registered

2009-08-06
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