MIRA - Sequence assembler for whole genome shotgun and EST sequencing data. Can use Sanger, 454 and Solexa / Illumina reads.
http://sourceforge.net/apps/mediawiki/mira-assembler/index.php?title=Main_Page
Features:
- Allows hybrid assemblies of Sanger, 454 and Solexa data
- Can use paired-end and / or unpaired data
- Supports ancillary data in TRACEINFO format (from NCBI)
- Marks places of interest with tags so that these can be found quickly in finishing programs
- Has a SNP analysis pipeline for sequencing data of viruses and procaryonts
Release Date:
2009-10-04
Topic:
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Registered:
2009-08-06
Ratings and Reviews
- Thumbs up: 8
- Thumbs down: 0
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Thumbs up
Great assembler :-)
Project Feed
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Project Information Updated
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MIRA 3 release candidate 4
MIRA 3 release candidate 4 is available from "Files" section: http://sourceforge.net/projects/mira-assembler/files/ I initially didn't plan for a rc4, but rc3 had too many smaller and larger bugs ... -
File released: /MIRA/mira_3rdparty_04-10-2009.tar.bz2
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File released: /MIRA/V3rc4/mira_3rc4_dev_linux-gnu_i686_32_static.tar.bz2
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File released: /MIRA/V3rc4/mira_3rc4_dev_linux-gnu_x86_64_static.tar.bz2
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File released: /MIRA/V3rc4/mira-3rc4.tar.bz2
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File released: /MIRA/V3rc3/mira_3rc3_dev_linux-gnu_i686_32_static.tar.bz2
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File released: /MIRA/V3rc3/mira_3rc3_dev_linux-gnu_x86_64_static.tar.bz2
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File released: /MIRA/V3rc3/mira-3rc3.tar.bz2
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MIRA 3 release candidate 2 released
Development for release candidate 2 of MIRA 3 concentrated on three main points. The first, reducing memory usage, has led to significant savings in assemblies containing Solexa / Illumina data as wel...
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