Any news on this ticket? If not, I'll close it.
Am I guessing right that this was a RNASeq/EST assembly? If yes, did you filter out...
Aborting process, probably due to an internal error.
Closed, no further feedback was given.
Space character in path name of executable causes failure
Fixed in 4.0.1
Hmmm ... the errors which are dumped out at the end make not much sense to me as...