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MIRA V5 is available only on GitHub!
The V4 version released here on SourceForge stay up as some automated release fetching packages rely on V4.
MIRA - Sequence assembler and sequence mapping for whole genome shotgun and EST / RNASeq sequencing data. Can use Sanger, 454, Illumina and IonTorrent data. PacBio: CCS and error corrected data usable, uncorrected not yet.
Features
- Allows hybrid assemblies of Sanger, 454, Solexa, IonTorrent and PacBio (CCS & ecCLR) data
- Can use paired-end and / or unpaired data
- Supports ancillary data in TRACEINFO format (from NCBI)
- Marks places of interest with tags so that these can be found quickly in finishing programs
- Has a SNP analysis pipeline for sequencing data of viruses and procaryonts
Categories
Bio-InformaticsLicense
GNU General Public License version 2.0 (GPLv2)nel_h2
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User Reviews
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MIRA is definitely an under-appreciated assembler which peforms well on smaller (viral/bacterial) genomes
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Mira-assembler works wonderful.
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it is not only the program which is spectacular, but also its author Mr.Chevreux is from outer space. you must definitely give a try.
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the best assembler so far