Autoprime

AutoPrime allows to rapidly design primers for real-time PCR measurement of eukaryotic expression.
By connecting to the EnsEMBL database gene structure information is used to find primers spanning exon borders. This way only expressed sequences are captured. Additionally mispriming on repetitive regions can be avoided using information from RepBase.

Features

Automated primer design
Quality control through detailed settings
Using well-known sources: Primer3, EnsEMBL, RepBase
Creating your primers since 2003
Website running as a service
Perl code available for local execution

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License

GNU General Public License version 2.0 (GPLv2)

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Additional Project Details

Operating Systems

BSD, Linux

Languages

English

Intended Audience

Advanced End Users, Science/Research

User Interface

Command-line, Web-based

Programming Language

Perl

Related Categories

Perl Bio-Informatics Software

Registered

2007-04-26

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