Re: [Samtools-help] Picard release 1.107

[Alec W. <al...@br...>]

One clarification: vcf.gz files will be in bgzf (block-compressed gzip) format.

-Alec

On Jan 27, 2014, at 10:23 AM, Alec Wysoker <al...@br...> wrote:

> Picard release 1.107
> 27 January 2014
> 
> - Build javadoc for variant and tribble packages as part of sourceforge release.
> 
> - Fix annoying bug where in order to use SamLocusIterator as an iterator one first had to call the .iterator() method on it to prime it.  Now auto-primes.
> 
> - Support writing of vcf.gz, but only without on-the-fly index creation.
> 
> - Set buffer size of BclReader to Defaults.BUFFER_SIZE, which defaults to 128K and can be controlled via -Dsamjdk.buffer_size=<buffer_size>.  Previous size was always 8192.
> 
> - Added nominal support for VCF4.2 headers (but just the headers)
> 
> 
> -Alec