From: John K. <srf...@gm...> - 2011-03-08 22:29:13
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Hi, I'm getting this error and unsure what its source comes from and why it's reporting it the way it does: INFO 2011-03-08 15:00:41 MarkDuplicates Will retain up to 2774097 data points before spilling to disk. [Tue Mar 08 15:00:41 CST 2011] net.sf.picard.sam.MarkDuplicates done. Runtime.totalMemory()=53542912 Exception in thread "main" java.lang.RuntimeException: SAM validation error: ERROR: Record 2, Read name 1782_1482_1219, RG ID on SAMRecord not found in header: 20110227233033839 at net.sf.samtools.SAMUtils.processValidationErrors(SAMUtils.java:334) at net.sf.samtools.BAMFileReader$BAMFileIterator.advance(BAMFileReader.java:449) at net.sf.samtools.BAMFileReader$BAMFileIterator.next(BAMFileReader.java:430) at net.sf.samtools.BAMFileReader$BAMFileIterator.next(BAMFileReader.java:397) at net.sf.samtools.SAMFileReader$AssertableIterator.next(SAMFileReader.java:604) at net.sf.samtools.SAMFileReader$AssertableIterator.next(SAMFileReader.java:582) Not sure what I did wrong? |