[Samtools-help] pileup ace like format

[Jose B. <jb...@bt...>]

Hi:
I've aligned some sanger and solexa reads to a reference genome with bwa. I've 
merged, sorted and pileuped the alignments. Now I have the bam and the pileup 
files.

I would like to obtain a caf like alignment file (or a file with such 
information). The information not present in the pileup file is the name, 
nucleotide and quality of each individual read that contribute to the 
consensus.

That information is very useful when reads originated from several 
individuals/samples are aligned.

Is that posible? If it is not posible, could you give me some direction on how 
could I program such tool?

Best regards,

-- 
Jose M. Blanca Postigo
Instituto Universitario de Conservacion y
Mejora de la Agrodiversidad Valenciana (COMAV)
Universidad Politecnica de Valencia (UPV)
Edificio CPI (Ciudad Politecnica de la Innovacion), 8E
46022 Valencia (SPAIN)
Tlf.:+34-96-3877000 (ext 88473)