From: Keith J. <kd...@sa...> - 2009-05-22 10:22:15
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I'm trying out the new 0.1.4 release using the ex1 dataset in the examples directory. I can run view sam->bam successfully on the sam file 'as is'. However, attaching a legal header causes the conversion to segfault. The following segfault with a legal SAM header samtools view -b -t ex1.fa.fai ex1.sam.gz samtools view -S -b -t ex1.fa.fai ex1.sam.gz samtools view -b -t ex1.fa.fai ex1.sam samtools view -S -b -t ex1.fa.fai ex1.sam The obsolete import function segfaults too. I'm running X86_64 gcc 4.3.3 The header was imported in version 0.1.3 thanks, -- - Keith James - Wellcome Trust Sanger Institute, UK - -- The Wellcome Trust Sanger Institute is operated by Genome Research Limited, a charity registered in England with number 1021457 and a company registered in England with number 2742969, whose registered office is 215 Euston Road, London, NW1 2BE. |