[Mev-tm4-devel] Nonpar.java patch for Fisher Exact

[Braisted, J. C. <bra...@jc...>]

A patched version of .../mev/cluster/algorithm/nonpar/Nonpar.java has
been committed to the Trunk and the 4.1.01 branch in the SF SVN.

 

The Fisher Exact test in Nonpar wasn't correctly handling evaluation of
group assignments in cases where some of the loaded samples were
'Excluded' by the user.  The subset of data was pulled from the matrix
but downstream, during taking the tally for the contingency matrix, the
original grouping information was used rather than the sample subset
reflecting excluded samples. You can diff to the previous version to
view the change.

 

This problem was found this morning and is confined to the Fisher's
Exact Test.

 

John

 

 

 

 

John Braisted 
Software Engineer II 
Pathogen Functional Genomics Resource Center (PFGRC)
J. Craig Venter Institute 
9704 Medical Center Drive 
Rockville, MD 20850