Re: [Libmesh-users] ex17 compilation error related to petsc

[Roy S. <roy...@ic...>]

What options did you use to configure libMesh?

I'll see if I can reproduce this.  We currently have --enable-complex
BuildBot tests and --enable-slepc tests but I don't think we're
testing the combination of the two...
---
Roy

On Fri, 28 Oct 2011, Kyunghoon Lee wrote:

> Hi all,
>
> I compiled petsc with complex variable support using the following options:
>
> ./configure --prefix=/Users/aeronova/
> Development/local/lib64/petsc/petsc-3.2-p4 --download-mpich=1
> --download-blacs=1 --download-parmetis=1 --download-scalapack=1
> --download-mumps=1 --with-scalar-type=complex --with-clanguage=cxx
>
> Then, rebuild slepc & libmesh (svn version).  As I test libmesh with
> examples, I got an error for ex17 (plz see the below).  I'd appreciate if
> someone could help me with this problem.  (ex7, complex variable example,
> seemed ok, though there were a couple of warnings such as WARNING! There are
> options you set that were not used!, WARNING! could be spelling mistake,
> etc!, Option left: name:-f value: .5)
>
>
> [0]PETSC ERROR: --------------------- Error Message
> ------------------------------------
> [0]PETSC ERROR: IPNorm: The inner product is not well defined!
> [0]PETSC ERROR:
> ------------------------------------------------------------------------
> [0]PETSC ERROR: Petsc Release Version 3.1.0, Patch 8, Thu Mar 17 13:37:48
> CDT 2011
> [0]PETSC ERROR: See docs/changes/index.html for recent updates.
> [0]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
> [0]PETSC ERROR: See docs/index.html for manual pages.
> [0]PETSC ERROR:
> ------------------------------------------------------------------------
> [0]PETSC ERROR: ./ex17-dbg on a darwin10. named spike.local by aeronova Fri
> Oct 28 05:13:59 2011
> [0]PETSC ERROR: Libraries linked from
> /Users/aeronova/Development/local/lib64/petsc/petsc-3.1-p8/lib
> [0]PETSC ERROR: Configure run at Fri Oct 28 04:12:19 2011
> [0]PETSC ERROR: Configure options
> --prefix=/Users/aeronova/Development/local/lib64/petsc/petsc-3.1-p8
> --download-mpich=1 --download-blacs=1 --download-parmetis=1
> --download-scalapack=1 --download-mumps=1 --with-scalar-type=complex
> --with-clanguage=cxx
> [0]PETSC ERROR:
> ------------------------------------------------------------------------
> [0]PETSC ERROR: IPNorm() line 70 in src/ip/ipdot.c
> [0]PETSC ERROR: IPOrthogonalize() line 338 in src/ip/iporthog.c
> [0]PETSC ERROR: EPSGetStartVector() line 1487 in src/eps/interface/solve.c
> [0]PETSC ERROR: EPSSolve_ARNOLDI() line 387 in
> src/eps/impls/krylov/arnoldi/arnoldi.c
> [0]PETSC ERROR: EPSSolve() line 146 in src/eps/interface/solve.c
> [0]PETSC ERROR: User provided function() line 488 in
> "unknowndirectory/"src/solvers/slepc_eigen_solver.C
> application called MPI_Abort(comm=0x84000000, 1) - process 0[unset]:
> aborting job:
> application called MPI_Abort(comm=0x84000000, 1) - process 0
> make[2]: *** [run] Error 1
> make[1]: *** [run] Error 1
> make: *** [run_examples] Error 2
> ------------------------------------------------------------------------------
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