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#985 jabref can't read bibtex files from the new web of knowledge

next release
closed
nobody
Import (77)
5
2014-07-01
2011-07-19
Anonymous
No

.bib of web of knowledge are not anymore readed by jabref. Jabref doesn't recognize the new line " Web of Science-Category = {{Biology}}, " in the bibtex file given by the new web of knowledge and give and error message.

exemple of the new .bib generated by web of knowledge :

@article{ ISI:000220545100005,
Author = {Baker, TR and Phillips, OL and Malhi, Y and Almeida, S and Arroyo, L and
Di Fiore, A and Erwin, T and Higuchi, N and Killeen, TJ and Laurance, SG
and Laurance, WF and Lewis, SL and Monteagudo, A and Neill, DA and
Vargas, PN and Pitman, NCA and Silva, JNM and Martinez, RV},
Title = {{Increasing biomass in Amazonian forest plots}},
Journal = {{PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY OF LONDON SERIES
B-BIOLOGICAL SCIENCES}},
Year = {{2004}},
Volume = {{359}},
Number = {{1443}},
Pages = {{353-365}},
DOI = {{10.1098/rstb.2003.1422}},
ISSN = {{0962-8436}},
Keywords = {{Amazonia; biomass; carbon; permanent plot; tropical forests}},
Keywords-Plus = {{TROPICAL RAIN-FOREST; BRAZILIAN AMAZON; SEVERE DROUGHT; EL-NINO; TREE;
DYNAMICS; IMPACT; MORTALITY}},
Subject-Category = {{Life Sciences \& Biomedicine - Other Topics}},
Web of Science-Category = {{Biology}},
}

Many thanks you for your software,

F. Wagner

Discussion

  • Nobody/Anonymous

    i have the same issue. Maybe Thomson-reuters could include dashes as in "Keywords-Plus" or "Subject-Category"

     
  • Igor

    Igor - 2014-07-01
    • status: open --> closed
    • Group: --> next release
     
  • Igor

    Igor - 2014-07-01

    Web of science entries now coming with dashes. It was a problem with their exporting format. Closing the issue. Here is the same entry generated by Web of Science:

    
    @article{ ISI:000220545100005,
    Author = {Baker, TR and Phillips, OL and Malhi, Y and Almeida, S and Arroyo, L and
    Di Fiore, A and Erwin, T and Higuchi, N and Killeen, TJ and Laurance, SG
    and Laurance, WF and Lewis, SL and Monteagudo, A and Neill, DA and
    Vargas, PN and Pitman, NCA and Silva, JNM and Martinez, RV},
    Title = {{Increasing biomass in Amazonian forest plots}},
    Journal = {{PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY OF LONDON SERIES
    B-BIOLOGICAL SCIENCES}},
    Year = {{2004}},
    Volume = {{359}},
    Number = {{1443}},
    Pages = {{353-365}},
    Month = {{MAR 29}},
    Note = {{Annual Meeting of the Association-for-Tropical-Biology-and
    -Conservation, Panama City, PANAMA, JUL, 2002}},
    Abstract = {{A previous study by Phillips et al. of changes in the biomass of
    permanent sample plots in Amazonian forests was used to infer the
    presence of a regional carbon sink. However, these results generated a
    vigorous debate about sampling and methodological issues. Therefore we
    present a new analysis of biomass change in old-growth Amazonian forest
    plots using updated inventory data. We find that across 59 sites, the
    above-ground dry biomass in trees that are more than 10 cm in diameter
    (AGB) has increased since plot establishment by 1.22 +/- 0.43 Mg per
    hectare per year (ha(-1) yr(-1), where 1 ha = 10(4) m(2)), or 0.98 +/-
    0.38 Mg ha(-1) yr(-1) if individual plot values are weighted by the
    number of hectare years of monitoring. This significant increase is
    neither confounded by spatial or temporal variation in wood specific
    gravity, nor dependent on the allometric equation used to estimate AGB.
    The conclusion is also robust to uncertainty about diameter measurements
    for problematic trees: for 34 plots in western Amazon forests a
    significant increase in AGB is found even with a conservative assumption
    of zero growth for all trees where diameter measurements were made using
    optical methods and/or growth rates needed to be estimated following
    fieldwork. Overall, our results suggest a slightly greater rate of net
    stand-level change than was reported by Phillips et al. Considering the
    spatial and temporal scale of sampling and associated studies showing
    increases in forest growth and stem turnover, the results presented here
    suggest that the total biomass of these plots has on average increased
    and that there has been a regional-scale carbon sink in old-growth
    Amazonian forests during the previous two decades.}},
    Publisher = {{ROYAL SOC LONDON}},
    Address = {{6 CARLTON HOUSE TERRACE, LONDON SW1Y 5AG, ENGLAND}},
    Type = {{Article; Proceedings Paper}},
    Language = {{English}},
    Affiliation = {{Baker, TR (Reprint Author), Max Planck Inst Biogeochem, Postfach 10 01 64, D-07701 Jena, Germany.
    Max Planck Inst Biogeochem, D-07701 Jena, Germany.
    Univ Leeds, Sch Geog, Earth \& Biosphere Inst, Leeds LS2 9JT, W Yorkshire, England.
    Univ Edinburgh, Sch Geosci, Edinburgh EH9 3JU, Midlothian, Scotland.
    Museu Paraense Emilio Goeldi, BR-66077530 Belem, Para, Brazil.
    Museo Noel Kempff Mercado, Santa Cruz, Bolivia.
    NYU, Dept Anthropol, New York, NY 10003 USA.
    Smithsonian Inst, Washington, DC 20560 USA.
    INPA, BR-69011970 Manaus, Amazonas, Brazil.
    Ctr Appl Biodivers Sci, Conservat Int, Washington, DC 20036 USA.
    Smithsonian Trop Res Inst, Balboa, Panama.
    Univ Nacl San Antonio Abad Del Cusco, Cuzco, Peru.
    Proyecto Flora Peru, Jardin Bot Missouri, Oxapampa, Peru.
    Missouri Bot Garden, Herbario Nacl Ecuador, Quito, Ecuador.
    Duke Univ, Ctr Trop Conservat, Durham, NC 27708 USA.
    CIFOR, Tapajos, Brazil.
    EMBRAPA, Amazonia Oriental, BR-66095100 Belem, Para, Brazil.}},
    DOI = {{10.1098/rstb.2003.1422}},
    ISSN = {{0962-8436}},
    Keywords = {{Amazonia; biomass; carbon; permanent plot; tropical forests}},
    Keywords-Plus = {{TROPICAL RAIN-FOREST; BRAZILIAN AMAZON; SEVERE DROUGHT; EL-NINO; TREE;
    DYNAMICS; IMPACT; MORTALITY}},
    Research-Areas = {{Life Sciences \& Biomedicine - Other Topics}},
    Web-of-Science-Categories = {{Biology}},
    Author-Email = {{t.baker@geog.leeds.ac.uk}},
    ResearcherID-Numbers = {{Pitman, Nigel/A-7681-2008
    Laurance, Susan/G-6021-2011
    Laurance, William/B-2709-2012
    Phillips, Oliver/A-1523-2011}},
    ORCID-Numbers = {{Pitman, Nigel/0000-0002-9211-2880
    Phillips, Oliver/0000-0002-8993-6168}},
    Number-of-Cited-References = {{42}},
    Times-Cited = {{199}},
    Journal-ISO = {{Philos. Trans. R. Soc. Lond. Ser. B-Biol. Sci.}},
    Doc-Delivery-Number = {{808BR}},
    Unique-ID = {{ISI:000220545100005}},
    }

     

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