Re: [Gmod-schema] [SO-devel] Fwd: [Gmod-gbrowse] ontology term for ECRs (Evolutionary Conserved Regions) and Gbrowsing ECRs

[Karen E. <kei...@ge...>]

Will definitely add this as a synonym.

--Karen

On Nov 16, 2006, at 2:06 PM, Suzanna Lewis wrote:

> I mean, I -meant- to copy the SO list
>
>
> Begin forwarded message:
>
>> From: Suzanna Lewis <su...@be...>
>> Date: November 16, 2006 4:04:39 PM EST
>> To: E. Noumen <en...@gm...>
>> Cc: "gmod schema" <gmo...@li...>
>> Subject: Re: [Gmod-schema] [Gmod-gbrowse] ontology term for ECRs  
>> (Evolutionary Conserved Regions) and Gbrowsing ECRs
>>
>> I am copying this to the SO list.
>>
>> I browsed around the existing terms (using miSO http:// 
>> sequenceontology.org/miSO/index.html) and found
>> conserved_region
>> SO:0000330
>> Definition: Region of sequence similarity by descent from a common  
>> ancestor.
>>
>> This seems appropriate, and perhaps Karen might consider adding  
>> ECR as a synonym.
>>
>> -S
>>
>> On Nov 16, 2006, at 3:48 PM, E. Noumen wrote:
>>
>>> Hello,
>>> I want to load ECRs (Evolutionary Conserved Regions) data in gmod- 
>>> chado, but i can't find a cvterm for ECR. Does that cvterm exists?
>>> Or does it have an alternate name ?
>>> This is how my data look like:
>>> ............
>>> scaffold_1      ECR Browser     ECR     9625    9815     
>>> 72%     .       .       ID=ECR1;Target=chr15:18620225-18620415
>>> ...........
>>> Thank you in advance.
>>> etienne
>>>
>>> On 11/16/06, Scott Cain <cai...@gm... > wrote:
>>> Hi etienne,
>>>
>>> I have no idea; two things to try are asking at the SO mailing list:
>>> https://lists.sourceforge.net/lists/listinfo/song-devel or if you  
>>> want
>>> to start with Chado-specific people, try the schema mailing list:
>>> https://lists.sourceforge.net/lists/listinfo/gmod-schema
>>>
>>> As for gbrowse, it can be configured to browse any feature type  
>>> that can
>>> be localized (ie, given a start and an end).
>>>
>>> Scott
>>>
>>>
>>> On Thu, 2006-11-16 at 10:56 -0800, The SportComputMan wrote:
>>> > Hello,
>>> > I am wondering if there exists an ontology term for ECRs 
>>> (Evolutionary
>>> > Conserved regions).
>>> > Also i would like to know if Gbrowse can be configured to  
>>> browse that type
>>> > of features.
>>> > Thank you.
>>> > etienne
>>> >
>>> > _________________________________________________________________
>>> > Ready for the world's first international mobile film festival  
>>> celebrating
>>> > the creative potential of today's youth? Check out Mobile Jam  
>>> Fest for your
>>> > a chance to WIN $10,000! www.mobilejamfest.com
>>> >
>>> >
>>> >  
>>> -------------------------------------------------------------------- 
>>> -----
>>> > Take Surveys. Earn Cash. Influence the Future of IT
>>> > Join SourceForge.net's Techsay panel and you'll get the chance  
>>> to share your
>>> > opinions on IT & business topics through brief surveys - and  
>>> earn cash
>>> > http://www.techsay.com/default.php? 
>>> page=join.php&p=sourceforge&CID=DEVDEV
>>> > _______________________________________________
>>> > Gmod-gbrowse mailing list
>>> > Gmo...@li...
>>> > https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse
>>> --
>>> -------------------------------------------------------------------- 
>>> ----
>>> Scott Cain, Ph. D.                                    
>>> cai...@gm...
>>> GMOD Coordinator (http://www.gmod.org/)                      
>>> 216-392-3087
>>> Cold Spring Harbor Laboratory
>>>
>>>
>>>
>>> -------------------------------------------------------------------- 
>>> -----
>>> Take Surveys. Earn Cash. Influence the Future of IT
>>> Join SourceForge.net's Techsay panel and you'll get the chance to  
>>> share your
>>> opinions on IT & business topics through brief surveys - and earn  
>>> cash
>>> http://www.techsay.com/default.php? 
>>> page=join.php&p=sourceforge&CID=DEVDEV
>>>
>>> _______________________________________________
>>> Gmod-gbrowse mailing list
>>> Gmo...@li...
>>> https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse
>>>
>>>
>>>
>>>
>>>
>>>
>>> -------------------------------------------------------------------- 
>>> -----
>>> Take Surveys. Earn Cash. Influence the Future of IT
>>> Join SourceForge.net's Techsay panel and you'll get the chance to  
>>> share your
>>> opinions on IT & business topics through brief surveys - and earn  
>>> cash
>>> http://www.techsay.com/default.php? 
>>> page=join.php&p=sourceforge&CID=DEVDEV______________________________ 
>>> _________________
>>> Gmod-schema mailing list
>>> Gmo...@li...
>>> https://lists.sourceforge.net/lists/listinfo/gmod-schema
>>
>
> ---------------------------------------------------------------------- 
> ---
> Take Surveys. Earn Cash. Influence the Future of IT
> Join SourceForge.net's Techsay panel and you'll get the chance to  
> share your
> opinions on IT & business topics through brief surveys - and earn cash
> http://www.techsay.com/default.php? 
> page=join.php&p=sourceforge&CID=DEVDEV________________________________ 
> _______________
> SOng-devel mailing list
> SOn...@li...
> https://lists.sourceforge.net/lists/listinfo/song-devel